Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01626 ATGGAATTGAAGAAAGGGAAATTCGTGAGGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGTAAGAGGCGTTTTGAGTTCGCATTACCATTTTTCAAAATGGGGACTGCTCCATTAACGAATGCGATTGGGGATAAAGGTAAAATTAGTTCAGATTTAGGGAGATTCAAGATTTTTGTGGAGAATAATGAGGCACAACGGAAGTGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAATAGGGTTTTTCTGTTCTCTTGTTTGACAGCTCTTTTCGTTGATCCTCTTTTCTTCTACCTTCCTTCAGTGATTCACCATAATAGATCGTCTTGTATGACTACTGATTTCAATTTGGGAATTGCTGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTTTTTCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCACCTACTTCGAGAGTTTTTGGGAAAGGTGAACTTGTTACTGATCCAAAGAAGATTGCTAAACGTTACTTGACGTCTGATTTCTGTATAGATCTGATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATAATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATAGTTCTGCTTCAGTACATTCCAAGGTTCTACCTGATCTTCCCATTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCAGGAGCTGCTTATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTACTTGCTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGAAGGGAATTCAGTCCTACGAAATGCCATCTCGACTATCTCGATTGTGGTACTTTAAATGATGTCAACCGTAGGATATGGGAAGTAAACACAACAGTATTTACCCAATGTTCTCCCGATGAAGATGTCGTTTTCAATTACGGGATATTTGCCAATGCAATCTCGAAAAACGTCATCTCGTTTGGGTTCGCTCAAAAGTACTTCTACTGTCTTTGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGGAGACAAGCACCTTCATAGGAGAAACTTCGTTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCTCATTTGATTGGTAATATGCAGACTTATTTGCAATCCATCACCGTGAGACTGGAGGAGTGGCGGGTGAAGCGGCGAGACACAGAGGAGTGGATGAATCATCGGCAGCTCCCCGAAGATTTACAAGAACGTGTGCGGAGATTTGTTCAGTATAAGTGGCTTGCAACGCGAGGTGTTGACGAAGAATCCATCTTACAAGCCCTTCCAACCGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTCTTTGCACAAATGGATGATCAGCTTCTCGACGCGATCTGTGAGCGATTAGCGTCGTCTTTATGTACGCAAGGCACGTTCATTGTTCGTGAAGGAGATCCTGTTACCGAGATGTTCTTCATCATCCGAGGAATGCTCGAGAGTTCCACGACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACATTGAGACCTGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAGAGCAATCACTGAAGTAGAAGCCTTTGCTCTACGAGCCGAGGATCTCAAATTCGTAGCGAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACGTTTCGGTTTTACTCTTACCACTGGAGAACATGGGCTGCTTGCTTCATTCAAGCAGCATGGCGTCGGTTCAAGAGGAGAATCATAGCAAAGACGCTCAGTATTCAGGAGTCTTTTTCGTTGAATCCCAAAAAGCCAATGGCCGATGAAGCCGAGCTAGAAGAGGAAGAACATAATCCACGATCTAATTATTCTCAAGCAAAACAAAACCTCGGCGTCACGATATTGGCGTCGAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTTAAGGATGTTAACTTAATGAAGCTGCGAAAGCCTGACGAGCCAGACTTTTCTGAAGAACCAGATGATTAA 2178 43.16 MELKKGKFVRFYSNEKKNLELPWEKNDGKRRFEFALPFFKMGTAPLTNAIGDKGKISSDLGRFKIFVENNEAQRKWILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIAVTVFRTFADVFYLFHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLTSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPTKCHLDYLDCGTLNDVNRRIWEVNTTVFTQCSPDEDVVFNYGIFANAISKNVISFGFAQKYFYCLWWGLQNLSSYGQGLETSTFIGETSFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMNHRQLPEDLQERVRRFVQYKWLATRGVDEESILQALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTFIVREGDPVTEMFFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKTLSIQESFSLNPKKPMADEAELEEEEHNPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLMKLRKPDEPDFSEEPDD 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12370950 12375068 + CmoCh01G016260.1 Cmo01g01626 375109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01626 725 MobiDBLite consensus disorder prediction 658 678 - -
Cmo01g01626 725 SUPERFAMILY cAMP-binding domain-like 416 608 IPR018490 -
Cmo01g01626 725 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 54 722 - -
Cmo01g01626 725 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 722 - -
Cmo01g01626 725 SMART cnmp_10 486 617 IPR000595 -
Cmo01g01626 725 Pfam Ion transport protein 88 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo01g01626 725 SUPERFAMILY Voltage-gated potassium channels 84 408 - -
Cmo01g01626 725 Pfam Cyclic nucleotide-binding domain 509 597 IPR000595 -
Cmo01g01626 725 ProSiteProfiles cAMP/cGMP binding motif profile. 486 616 IPR000595 -
Cmo01g01626 725 MobiDBLite consensus disorder prediction 703 725 - -
Cmo01g01626 725 Gene3D - 86 412 - -
Cmo01g01626 725 MobiDBLite consensus disorder prediction 659 674 - -
Cmo01g01626 725 CDD CAP_ED 486 617 IPR000595 -
Cmo01g01626 725 MobiDBLite consensus disorder prediction 703 718 - -
Cmo01g01626 725 Gene3D Helix hairpin bin 414 477 - -
Cmo01g01626 725 Gene3D Jelly Rolls 484 604 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01626 Cmo-Chr1:12370950 Cmo10g00459 Cmo-Chr10:2062469 0 dispersed
Cmo13g01147 Cmo-Chr13:9272262 Cmo01g01626 Cmo-Chr1:12370950 2.39E-137 dispersed
Cmo01g01626 Cmo-Chr1:12370950 Cmo11g00422 Cmo-Chr11:2075897 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01626 K05391 - csv:101211072 1228.77