Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01633 ATGTGGTTACCAAGATACAGCTTAGACAGAAAAGAGAGATTGAATGTGAATGGATTTGTGGCGGTGGCCATTGACAAAGACAAAGGCAGCCAAGGGGCTCTCAAATGGGCAATTGATCATTTGCTTCGCAGAGGCCAAACTGTTTTCCTCGTTCATGTCAAACTCAGATCCCCTTCTAATTCTTCCCTAAAGATGAAATCTGACCCCGAAGCTGGCGTTAGAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGAAAAGATATTCAATGCAAAGATGTTGTGTTGGAAGATACAGACATAGCTAAGGCCTTAACTGAGTATGCTGCAAATACAGCCATAGAGAACATTGTTGTGGGAGCTTCATCAAAATCTGGCTTTTTAAGATTCAAGGCAACTGATGTTCCTGGCAATGTCTCAAAAGGAGCACCAGATTTTTGCAATGTGTTTGTCATTTCTAAAGGCAAAATTCAATCGATGCGTTCGGCATCTCGTCCCGCTCCGGTCGTGAATCCTCTACGGTCGCAATTAGTGCAACAAAGCAGCACAAAATCCATCAGCTCCGACTACCAATTTCCTCAGACTACATCTGCAAGAGCCTCTTTGGATAAACGTCCCTTTGTTCTGCCACGTAGATCGCAGGATGAGGCGGATTTCATGAGGTCACCCTTCACAAGGAAAGGATACAATTACAAACCGTCGTATGGAGATTCGTCTTTTCAAGAATCAGATATATCGTATGTTAGCTCAGGAAGACCGAGCATTGATCGTATATTTCCTTCAGTTTATGACAGCCTAGATATGGGAGGAAGAGCCACCCCACCACGGATGTCGAGTAGTACAGATCTTGACTTGACTCAGAGCTTCGAGTCTCTACCGATGGGACGGTTATCGATGGATATGAACTTCCCGTCCGAGTTCTCTTCGATCTCGCAAGATAGTGATAGATTGTCAATCTCATCACAGTCTTTGGAAGATGTGGAGGCTGAGATGCGTAGGCTCAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGCACAGCCTGCAAGGAAGCACTTACAGCAAAACAAAAGGCGGTCGAGCTGCAACGCTGGAAATTAGAAGAAGAACAAAGAATAGAAGAGGCGAGATTGGCCGGGGAAGCTGCATTGGCGCTGGCCGAACAGGAGAAGGCGAAGTCGAAAGCAGCCATCGAGGCAGCAGAGGCAGCTAGGAGGATAGCAGAATTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCTCACAAAGAAGCTGAAGAAAAGAAAAGGGCTATTGATGCATTGTCACAAAACGATATCAGGTATAGAAAGTATACGATCGAGGAGATCGAAGAGGCAACGGAATTCTTTGCTGAATCTCGTAAGATCGGAGAAGGCGGTTATGGTCCAGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTTTACGTCCCGATGCAACTCAAGGACGATCGCAGTTTAAACAAGAGGTAGAAGTACTTAGCTGTATACGCCATCCAAACATGGTGCTCCTCCTCGGAGCGTGCCCCGAGTACGGCTGCTTGGTCTACGAGTTCATGGCTAATGGGAGCTTAGAAGATCGACTTCTACAACGAGGAAACACGCCTCCACTTTCGTGGCAGCTCAGGTTTCAAATTGCAGGTGAAATTGGAACAGCATTGTTGTTCCTACACCAAACAAAGCCAGAGCCACTCGTGCATCGTGATCTCAAACCAGCTAATATTTTGCTCGATCGTAACTTTGTTAGTAAGATTAGTGACGTCGGCTTAGCCAGACTCGTACCTCCATCGGTTGCGGATAACGTAACACAGTACCGAATGACATCGACTGCTGGAACATTTTGCTACATTGATCCCGAGTATCAGCAGACAGGCATGCTTGGCGTGAAATCAGACATATACTCATTAGGCATCATGTTTCTCCAGCTGATAACTTCTCGGCCGCCAATGGGATTGACTCACCATGTTGAACGAGCGATCGAGAATGATATGTTTGCAAATATTCTCGATCCAGCCGTTACCGATTGGCCTGTCGAAGAAGCGTTGTCGTTCGCCAAGATGTCGCTCAAGTGTGCCGAGTTAAGACGTAAAGATAGGCCTGATCTTGGAAAGGAAATCCTTCCGGAGCTTAACAGGTTGAGAACTATTGCAGAAGATTATATACACCCAACACTGATGGGAGACATAAGCCCCACTCGCAGCAGCAGCCAAGTTTCTCTACCGTTGGGAATGATGAGTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCAACGGCTGCTGCATCAACGGCTGCTGTTTGA 2340 45.98 MWLPRYSLDRKERLNVNGFVAVAIDKDKGSQGALKWAIDHLLRRGQTVFLVHVKLRSPSNSSLKMKSDPEAGVRELFLPFRCFCTRKDIQCKDVVLEDTDIAKALTEYAANTAIENIVVGASSKSGFLRFKATDVPGNVSKGAPDFCNVFVISKGKIQSMRSASRPAPVVNPLRSQLVQQSSTKSISSDYQFPQTTSARASLDKRPFVLPRRSQDEADFMRSPFTRKGYNYKPSYGDSSFQESDISYVSSGRPSIDRIFPSVYDSLDMGGRATPPRMSSSTDLDLTQSFESLPMGRLSMDMNFPSEFSSISQDSDRLSISSQSLEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRIEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKAHKEAEEKKRAIDALSQNDIRYRKYTIEEIEEATEFFAESRKIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLQRGNTPPLSWQLRFQIAGEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIENDMFANILDPAVTDWPVEEALSFAKMSLKCAELRRKDRPDLGKEILPELNRLRTIAEDYIHPTLMGDISPTRSSSQVSLPLGMMSSSPQSYNSSRNPSTAAASTAAV 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12395026 12401462 - CmoCh01G016330.1 Cmo01g01633 375116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01633 779 SMART serkin_6 458 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01633 779 Gene3D Phosphorylase Kinase; domain 1 436 530 - -
Cmo01g01633 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 576 588 IPR008271 GO:0004672|GO:0006468
Cmo01g01633 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Cmo01g01633 779 MobiDBLite consensus disorder prediction 742 779 - -
Cmo01g01633 779 Coils Coil 384 439 - -
Cmo01g01633 779 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 770 - -
Cmo01g01633 779 Gene3D HUPs 11 152 IPR014729 -
Cmo01g01633 779 Coils Coil 317 344 - -
Cmo01g01633 779 ProSiteProfiles Protein kinase domain profile. 458 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01633 779 CDD STK_N 20 155 - -
Cmo01g01633 779 SUPERFAMILY Protein kinase-like (PK-like) 439 713 IPR011009 -
Cmo01g01633 779 Pfam Protein kinase domain 459 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01633 779 PANTHER OS02G0152300 PROTEIN 12 770 - -
Cmo01g01633 779 Gene3D Transferase(Phosphotransferase) domain 1 531 734 - -
Cmo01g01633 779 Coils Coil 350 370 - -
Cmo01g01633 779 Pfam Universal stress protein family 21 144 IPR006016 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01633 Cmo-Chr1:12395026 Cmo11g01716 Cmo-Chr11:12161082 0 dispersed
Cmo15g01416 Cmo-Chr15:9652325 Cmo01g01633 Cmo-Chr1:12395026 1.27E-127 dispersed
Cmo05g01403 Cmo-Chr5:10815069 Cmo01g01633 Cmo-Chr1:12395026 8.47E-141 transposed
Cmo01g01633 Cmo-Chr1:12395026 Cmo12g00230 Cmo-Chr12:1521191 0 wgd
Cmo01g01633 Cmo-Chr1:12395026 Cmo05g00647 Cmo-Chr5:3265098 0 wgd
Cmo01g01633 Cmo-Chr1:12395026 Cmo09g00527 Cmo-Chr9:2474861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74064 PF00069 Pkinase 2.10E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01633 - - csv:105435028 1252.27