Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01639 ATGGCATGGGGCAACATATACAGAAGAAGAATGAGAGTGTTCACCCTGGCTTTAGTGATATACCTGGATTATAAGGCATTAGAACAAAGAGAGAAGTGGATTAGCAAGTCTAAAAGATCAGCCTTATGGGAAAAGGCACATGAACGTAATGCAAAGCGCTCGTTGAGTTTGATTATAGAGTTGGAAGGTTTGTGGGTGAAATTTGGACAGTATTTATCTACTCGAGCAGATGTTATACCTGATGCCTACATACGCCTCCTCAAACAGTTACAGGACTCTCTTCCTCCTCGTCCTTTACAAGAGATTCGTCAGACCATACAGAAAGAGTTGGGGAAACCAATCAGTGATTTGTTTACAAACTTTGTGGAAGCGCCCTTAGCAACTGCATCTATAGCCCAAGTGCACCGAGCAACGTTGCTTGATGGAAGGGAGGTGGTTATCAAAGTGCAACACGAGGGCGTAAAGGCAGTTATATTAGAGGACCTGAAGAATGCAAAGGCGGTTGTTGATTGGATAGGCTGGGCAGAGCCGCAGTATGACTTTAATCCCATTATAGATGAATGGTGCCGAGAAGCTCCCAAAGAACTTGATTTCAATCTTGAAGCTGAGAACACTAGGACAGTATCTAGAAATCTTGGCTGCACAAACGAATCGGATGGTAATGAAGTCCTTGGGACTGTGAATGTTTCTATACCGGAAGTTATTCAGTCAACAGAGAAAGTTCTAATTTTAGAGTATATGGACGGTATACGCTTAAATGACGCTGCTGACCTGGAAGCTTATGGTATTGACAAACACAAAATTGTTGAAGAAATCACACGAGCTTATGCACACCAAATTTATGTTGATGGATTTTTCAATGGCGACCCTCATCCTGGGAATTTTCTCATCAGCAAGGAGCCTCCTCATCGTCCAATTTTGCTCGACTTTGGGCTTACAAAGAAATTACCTTGCACCATGAAACTAGCTCTGGCAAAGATGTTTTTAGCAGCTGCAGAGGGTGACCACGTTGCTCTTCTATCTTCCTTCGCTGAAATGGGACTTAAGTTGCATCTTGATGTGCCAGAGCAAGCAATGGCGGTGACAAATGTATTCTTTCGAGCAGCAACTGCTGCAAAAGAATCACATGAAACCTTCAAAGCTGCGGCAGAGCAAAGATCGAAGAATCTGAAGGAAATACAAGAAAAAATGAAATTAAATCATAAGGAGGCTAAACGTTTTAATCCTGTTGATGCATTTCCTAGTGATATTATAATATTTGCACGGGTCCTTAATCTTCTAAGAGGTCTTTCCTCCTTGATGGATGTTCGCACAGTATATCTAGATATCATGAGACCGTTTGCTGAATATGTTCTACAAGCAAGCATTAGCAAGGAGCCAAATGTAAATGATCAATGGATCTGGAGAACACCTATTCATTCTGATGTGGAAGATAAGCTGAGACAGCTCTTAATCAAGCTGGGGAATGAGAATAAAATACTTGGAATCCAGGTGTGTGCCTACAAAGATGGAGAGGTCATTATTGATACTGCTGCTGGAGTTATGGGTAAATATGATCCTCGTCCAGTTCAACCTGATACTCTTTTTCCAGTGTTCTCTGTGACAAAGGGCATCACAGCTGGAATGTTGCATTGGCTAGTTGATAATGGGAAACTGAAGTTTGAGGAAAATATTGCTAATATTTGGCCGGAATTTGGATCAAATGGTAAAGATATAATAAAGGTCTATCAAGTGCTTAACCACACTTCAGGTCTGCATAATGCCACGGTCAATATTAGGGAAAATCCTTCGCTAATTTGTGACTGGGACGAATGTTTGAATTGCATGGCTAAATCAGTGCCAGAGACTGAACCTGGCCAGGAGCAGGTGTATCACTATCTATCCTATGGGTGGCTATGTGGTGGAATCATTGAGCACGCAACGGGGAAGAAATTCCAAGAGATTCTTGAAGAAGCATTAGTTAACCCGCTCCATATACAAGGCGAGCTATACATCGGAATCCCTCCCGGAGTTGAATCTCGTCTTGCAACACTAACACCAGATCTTAATGATCTACAAAATATCTCTGGGATCGATCCTTCTGAATTGCCCTCCACCTTCCAGCCAACCATGATTGCGCAGCTTGCCAGTACTCTCGCACCTCTATTTAATATGCTCAATACTCGCCGTGCCGTTATACCTGCTGCCAATGGACATTGCTCGGCCCGCGCACTGGCACGTTATTATGCAGCATTGGCTGGTGGCGGTGTGATACCACCACCGCATTCCTCAGCCTCCCAACCAGCTCTTGGAAGCCACCCTCACATCCCTAAATTTCCCTCCGAGAATTCAAAGAAGCAAAAAGCTTCCAGAACTAAGGACATTCATGCCAACTTAAATAATGACCATCAAAAGAACTTGAATTCTACTGAAACCGACGCCAATGGTGGTCTCTTCAGGAATACAAGCAATACTGGTTATACTAGGCTCCTTGATAACAGCAGCAGTAGCAATGCCAATGATCCCAGCACAAGAGCCGACTCGAGGCATGGAAACACTGCAAAAAAGTTCGTAGGAAACATGTTCAAAGACCCTAGAATTCATGATGCCTTTTTGGGTATAGGCAAATATGAGAATTTCGCCATTCCAAATGGGAAGTTTGGATTAGGATTCTCAAGGTTGAGATCAGATGAAGGTTCTTTTATTGGTTTTGGCCATTCAGGAATGGGCGGATCCACAGGTTTTTGTAATATTGATCACAATTTTGCCATCTCCGTGAACCTCAACAAAATGTCTCTGGGGGGTGTTACTGCCAGCATAGTTCAGTTCGTTTGTTCCGAGCTGAATATCCCGTTACCAGCCGAATTTTCCCCGCTCGTGGTGGCCACTCCTTTGATTAACTGA 2883 43.25 MAWGNIYRRRMRVFTLALVIYLDYKALEQREKWISKSKRSALWEKAHERNAKRSLSLIIELEGLWVKFGQYLSTRADVIPDAYIRLLKQLQDSLPPRPLQEIRQTIQKELGKPISDLFTNFVEAPLATASIAQVHRATLLDGREVVIKVQHEGVKAVILEDLKNAKAVVDWIGWAEPQYDFNPIIDEWCREAPKELDFNLEAENTRTVSRNLGCTNESDGNEVLGTVNVSIPEVIQSTEKVLILEYMDGIRLNDAADLEAYGIDKHKIVEEITRAYAHQIYVDGFFNGDPHPGNFLISKEPPHRPILLDFGLTKKLPCTMKLALAKMFLAAAEGDHVALLSSFAEMGLKLHLDVPEQAMAVTNVFFRAATAAKESHETFKAAAEQRSKNLKEIQEKMKLNHKEAKRFNPVDAFPSDIIIFARVLNLLRGLSSLMDVRTVYLDIMRPFAEYVLQASISKEPNVNDQWIWRTPIHSDVEDKLRQLLIKLGNENKILGIQVCAYKDGEVIIDTAAGVMGKYDPRPVQPDTLFPVFSVTKGITAGMLHWLVDNGKLKFEENIANIWPEFGSNGKDIIKVYQVLNHTSGLHNATVNIRENPSLICDWDECLNCMAKSVPETEPGQEQVYHYLSYGWLCGGIIEHATGKKFQEILEEALVNPLHIQGELYIGIPPGVESRLATLTPDLNDLQNISGIDPSELPSTFQPTMIAQLASTLAPLFNMLNTRRAVIPAANGHCSARALARYYAALAGGGVIPPPHSSASQPALGSHPHIPKFPSENSKKQKASRTKDIHANLNNDHQKNLNSTETDANGGLFRNTSNTGYTRLLDNSSSSNANDPSTRADSRHGNTAKKFVGNMFKDPRIHDAFLGIGKYENFAIPNGKFGLGFSRLRSDEGSFIGFGHSGMGGSTGFCNIDHNFAISVNLNKMSLGGVTASIVQFVCSELNIPLPAEFSPLVVATPLIN 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12439564 12448538 - CmoCh01G016390.1 Cmo01g01639 375122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01639 960 PANTHER ABC1 FAMILY PROTEIN 1 950 - -
Cmo01g01639 960 MobiDBLite consensus disorder prediction 772 793 - -
Cmo01g01639 960 Pfam Beta-lactamase 481 764 IPR001466 -
Cmo01g01639 960 SUPERFAMILY beta-lactamase/transpeptidase-like 474 930 IPR012338 -
Cmo01g01639 960 SUPERFAMILY Protein kinase-like (PK-like) 91 324 IPR011009 -
Cmo01g01639 960 Gene3D - 475 783 IPR012338 -
Cmo01g01639 960 PANTHER ABC1 FAMILY PROTEIN 1 950 - -
Cmo01g01639 960 CDD ABC1_ADCK3-like 89 343 - -
Cmo01g01639 960 Coils Coil 380 400 - -
Cmo01g01639 960 MobiDBLite consensus disorder prediction 753 845 - -
Cmo01g01639 960 MobiDBLite consensus disorder prediction 794 840 - -
Cmo01g01639 960 Pfam ABC1 atypical kinase-like domain 89 340 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01639 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101216220 1631.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01639 Cmo-Chr1:12439564 Cmo13g00814 Cmo-Chr13:7642453 1.95E-52 dispersed
Cmo01g01639 Cmo-Chr1:12439564 Cmo09g00534 Cmo-Chr9:2525735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01639 Cmo_Chr01 FPKM 5.50619 5.446948 3.174576 3.361841 16.527 15.403668 16.677668 3.090995 2.73497 2.74453