Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01643 ATGGCTCCGCCTGCGCCGTCTCATCGAACTCCATCGCCGTCCCAACCATCGGGAAAAAGCGAAGTATCTGATCTGAAATCACAGCTCCGGCAGCTTGCTGGAAGCAGAGCACCTGGTGTTGAAGATTCCAAGAGGGAGCTTTTCAAGAAAGTGATATCTTACATGACTATTGGGATTGATGTATCGTCTCTCTTTGGAGAGATGGTGATGTGCTCCGCTACATCAGACATTGTTCTTAAGAAAATGTGCTATCTATACGTTGGCAATTATGCCAAGGTGAATCCTGATCTTGCTCTGCTCACAATTAATTTTCTTCAAAGGGATTGCAAGGATGAGGATCCAATGATTAGAGGGCTTGCTTTGAGGAGCTTATGTTCACTTCGCGTTGCAAATCTTGTTGAGTATCTGGTAGGGCCCTTGGGTTCTGGCTTGAAGGATAACAATAGTTATGTGAGAATGGTGGCAGTTACGGGGGTTTTGAAACTATATCATATATCTGCTTCGACGTGTGTAGATGCTGATTTTCCAGCAACGTTGAAGCATTTGATGCTCAATGATCGAGATACTCAGGTAGTTGCAAATTGTTTATCTGCTCTACAAGAGATTTTGACCTCAGAAGCCAGCTCCTTGGAAGAAGCATCTAGGGAAAGAGAGGCTTTGCTCAGTAAGGCAGTTGTGTATTATCTTCTGAATCGGATCAAGGAATTTAATGAATGGGCACAGTGTCTTATACTTGAATTGGTCTCCAAATATGTACCTTCAGATAGCAATGAGATTTTTGATATCATGAACCTTCTTGAAGATAGACTTCAGCATGCTAATGGTGCTGTTGTATTGGCAACCACCAAAGTTTTTCTACATTTGACTTTATCCATGACTGACGTTCACCAACAGGTCTATGAACGGATTAAAGCACCTCTCTTAACCCTAGTGAGCTCAGGAAGCCCGGAGCAATCTTATGCAGTTCTAAGCCATCTTCATCTCCTGGTGATGCGTGCTCCATTTATATTTTCCTCAGACTATAAACACTTCTATTGTCAATACAATGAGCCATCTTATGTCAAAAAATTGAAGCTTGAAATGTTGACTGCGGTGGCAAATGAAAGCAACACGTACGAAATTGTGACGGAATTATGTGAATATGTTGCAAATGTTGATATTCCCATTGCAAGAGAGTCAATACGTGCTGTTGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCAATTGTCGATCGACTTCTGCAGTTTTTGGAGATGGAAAAGGACTATGTGACTGCTGAAGCTCTGGTACTTGTTAAAGATCTTCTGAGAAAATATCCACAATGGAGTCATGATTGCATTGCTGTTGTCGGCAGCATCAGCAGTAAAAACATTCAAGAACCAAAGGCGAAAGCAGCTCTTATCTGGATGTTGGGGGAGTACTCACAAGACATGCACGATGCCCCATATATTCTAGAGAGTTTAATTGAGAACTGGGATGATGAGCCTTCTGCTGAGGTTCGCCTACATATTCTCACTGCAGTGATGAAGTGTTTCTTCAAAAGGCCTCCTGAAACTCAGAAGGCTTTGGGAGTTGCACTGGCAGTTGGTCTTGCTGACTTTCACCAGGATGTACACGATCGAGCACTATTCTACTACAGGCTTTTGCAATATAATGTTTCTGTAGCTGAACGTGTCGTCAATCCTCCAAAGCAAGCCGTTTCTGTATTTGCTGATACACAGAGCAGTGAAGTCAAGGATAGAATATTTGACGAATTTAATAGTTTGTCTGTTATTTATCAGAAGCCATCTTACATGTTCACTGACAAGGAACACCGAGGTCCATTTGAGTTCTCAGACGAACTCGGAAATTTGTCTCTTGGTGCAGAGTCTGCAGATGCCGTTGTTCCAGCTCAGCAAGTCGAGGCAAACGATAAGGACCTACTTCTAAGCACATCAGTGGAAGAGGAAACTAGAATTGTAAGTAACAATGGTTCTGCATATAGTGCTCCTTCATATGAAGGCTCCGTTGGAGCTCTCATTCCTCAAGCGCCATCAGAATTTGCAGTCTCGAATCCTTCCATACCCGAGCCTGCTCCACCATCGAGCTCTCCAATTGATGATCTACTTGGCCTAGGTCTACCAACAGTGTCTGCTCCTGCTCCTGCGCCTGCGCCTTCACCACCTCCTCTGCAGCTAAATTCAAAAGCTGTTTTAGCTCCAGGAACTTTTCAGCAGAAATGGCGCCAGCTTCCTATATCTGTATCACTGGAACATGCTGTAAGCCCGAGAGGCAGTGCAGCTCTAACATCACCGCAAGTCCTCCTCCGGCACATGCAAAGCCATTCCATTCATTGCATTGCATCCGGTGGCCAGGCACCGAACTTCAAATTTTTCTTCTTCGCACAAAAGCAAGAAGAACCATCCAACTTTCTGGTGGAGTGCATAATCAACACAGCATCCGCCAAAGCACAGATAAAGGTCAAAGCGGACGACCAAACTGCATCACAAGCTTTCTCGTCTCTGTTCCAAACAGCTCTGGCCAACTTTGGTATGTTATGA 2544 44.06 MAPPAPSHRTPSPSQPSGKSEVSDLKSQLRQLAGSRAPGVEDSKRELFKKVISYMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVTGVLKLYHISASTCVDADFPATLKHLMLNDRDTQVVANCLSALQEILTSEASSLEEASREREALLSKAVVYYLLNRIKEFNEWAQCLILELVSKYVPSDSNEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPFIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYVANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSKNIQEPKAKAALIWMLGEYSQDMHDAPYILESLIENWDDEPSAEVRLHILTAVMKCFFKRPPETQKALGVALAVGLADFHQDVHDRALFYYRLLQYNVSVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVIYQKPSYMFTDKEHRGPFEFSDELGNLSLGAESADAVVPAQQVEANDKDLLLSTSVEEETRIVSNNGSAYSAPSYEGSVGALIPQAPSEFAVSNPSIPEPAPPSSSPIDDLLGLGLPTVSAPAPAPAPSPPPLQLNSKAVLAPGTFQQKWRQLPISVSLEHAVSPRGSAALTSPQVLLRHMQSHSIHCIASGGQAPNFKFFFFAQKQEEPSNFLVECIINTASAKAQIKVKADDQTASQAFSSLFQTALANFGML 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12468563 12475272 + CmoCh01G016430.1 Cmo01g01643 375126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01643 847 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 16 845 IPR026739 GO:0016192
Cmo01g01643 847 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g01643 847 MobiDBLite consensus disorder prediction 682 723 - -
Cmo01g01643 847 Gene3D - 14 608 IPR011989 -
Cmo01g01643 847 SMART B2_adapt_app_C_2 725 842 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cmo01g01643 847 PIRSF Beta_adaptin 11 847 IPR016342 GO:0015031|GO:0030276
Cmo01g01643 847 SUPERFAMILY ARM repeat 28 598 IPR016024 -
Cmo01g01643 847 Pfam Adaptin N terminal region 39 551 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cmo01g01643 847 Gene3D - 716 845 IPR012295 -
Cmo01g01643 847 Pfam Beta2-adaptin appendage, C-terminal sub-domain 729 841 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cmo01g01643 847 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 16 845 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01643 - - - csv:101215264 1481.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01643 Cmo-Chr1:12468563 Cmo15g01305 Cmo-Chr15:8949684 4.10E-106 dispersed
Cmo01g01643 Cmo-Chr1:12468563 Cmo02g01471 Cmo-Chr2:8630208 2.33E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g336 Blo01g01708 . . . . Bpe02g00235 . Bma01g02485 . . Cma01g01595 . . . . . . . . . . . . . . . . . . . . Cone4ag1537 Cone7ag1415 . . Lsi04g02220 Csa03g04432 Chy04g00267 . . . . . . . . . Sed05g1613 Cmo01g01643 . . . Car01g01214 . . Cpe02g00382 Bhi09g02413 Tan01g3774 Cmetu04g2386 . Hepe01g2114 Mch11g0652 . . . . . . . . . . . Cme04g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010989 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01643 Cmo_Chr01 FPKM 9.286944 9.548043 11.608271 12.598895 7.319861 6.815443 7.838974 9.612697 7.709888 8.104726