Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01655 ATGGCAAAATTCAATTGCTTCTCCGTTCGATCAGGGAAGAAGAAGAAAACCAAGGATGGTTTAGAATCGCAAATGCCTGCTGAATTGAATAGTTTGACGAAGACCTTGCAAGTCAGCATCCATCACACTGAGGAGTCTTTTCAAGATGGAGAAGCGAAGTCATCGACCATGGACGTCGCAATTCTGTACCCATCTGAGAATAATTCTAAGCTGGATGTTAAGGTAACGAACAATGAGAATCCTGTAGGAGGAGGAGCAGTAGAAGCTGCATATGAAGGGGAAGACGAGCGTGATGACAACTCCATCAAGAGGAACCTTTCTGACTTTGATCTCGCTGCTCAAGACACCTGTGGAGAAGAATTTGAGTTTCGGTTTTCTACTTCGTTGGAAAAACAATTTGATAACACTGAAGGTGGAGAGGAGGCTGATGCGATCCAAACTGGACATGTTAGTGATCCTGGAATTGGTAAGGCAGTATGTTGGGCATCGCCTAAACTTAAACGCTCCTGCTCTAATCTGGAAACCAGGGATGTGCTTAGAGATCTATCTCATCCGATGCCCCCTTCAAAGTCTCAGTCTTTCGAGAAACTGCAAGAATTGGCTGACAAAATGTGGAACTATGTCGAGCCGGGCAGTCCAGAATCTATTATGACCCATCGCAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCGAGCCAGATTCTGCCTTCCAGAAGTAGAAGGTTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTGCAAAAGCCGTGGACTACCAAGGCTGCTGCTCCTACTAGCTCTGCTTTCAACCAGCAAGGTGGGTATTGTTCGGATAATCTCGAGCCGAACAGAGCTGTGGGGAAAAGTATGATGGAATCGCCTGGATCATTTGCAGAGGAAACCTGGACCAATGACCCGAATAACAGTAAAGTTGAGGATCAGAATCAGGAGAGCTTGTGTAATGGAGTCTCTGGTTTGTGGCCACAAAACCAGTGGGTTGCATTTTCAGCAGAATCATCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATTGAGCCATGTCTTTCGATCGACAACATTAGAGATGACAACGATGAAGATACTTTCTCCCCGCCATATCCCGAGAGAACTGCAAGTCACACAGCTCGACGTGGAGAACTCAATCTTACAGAAGAGATTTTGCACGCGAATAGCGTCATCCAATCTCTGAATTCTTCCTCGACCGTGGCTCACATCTCTGGTATTGGCTTAAAAGCCATACCCACAATCTCACACCTATCCGGTCTTAGATCCATCAATTTGTCCGGCAACCTCATAGTTCACATCAACTCTGGATCACTGCCCAAGGGGCTGCACACTCTTAACTTGTCCAGGAACAAGATCAGCGCCATTGAAGGACTCAAAGAATTAACACGTCTTCGAATCCTCGACCTGAGTTACAATCGCATTTCTCGCATAGGACATGGGCTGTCAAATTGTGCGATTATCAAGGAACTTCATCTCGCTGGCAACAAGATTAGTGATGTCGAGGGACTACATCGACTCTTGAAGCTCACTGTACTCGACCTGAGCTTCAACAAGATTTCAACAACCAAAGCTCTGGGCCAACTTGTAGCCAACTATAACTCTCTTCAAGCTCTTAATCTGTTGGGAAATCCAATTCAAAGCAACGTGAGTGATGAGCAGCTTCGCAAGGCTGTTATTGGCCTTCTTCCAAACCTTGTTTATCTAAACAAGCAGGCCATCAAAGCACAGAGAGCTCGAGAAGCAGCGACCGATAGCATTGCTAAAGCGGCACTGGGAGGGAACAGCAGTTGGAATTCTCGCAGAAGATCATCAAGGAAAACAAGCCAGATGATTGCATCGTCTTCTATTAGTGGGCGGAGGAGCAGCACTGCAAGTGTTGCTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCCCGCGCCCTTCTTCTCTGGGGTTGGCTTCATCTCGTTAA 1998 46.6 MAKFNCFSVRSGKKKKTKDGLESQMPAELNSLTKTLQVSIHHTEESFQDGEAKSSTMDVAILYPSENNSKLDVKVTNNENPVGGGAVEAAYEGEDERDDNSIKRNLSDFDLAAQDTCGEEFEFRFSTSLEKQFDNTEGGEEADAIQTGHVSDPGIGKAVCWASPKLKRSCSNLETRDVLRDLSHPMPPSKSQSFEKLQELADKMWNYVEPGSPESIMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTTKAAAPTSSAFNQQGGYCSDNLEPNRAVGKSMMESPGSFAEETWTNDPNNSKVEDQNQESLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCLSIDNIRDDNDEDTFSPPYPERTASHTARRGELNLTEEILHANSVIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSINLSGNLIVHINSGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCAIIKELHLAGNKISDVEGLHRLLKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQSNVSDEQLRKAVIGLLPNLVYLNKQAIKAQRAREAATDSIAKAALGGNSSWNSRRRSSRKTSQMIASSSISGRRSSTASVAAHKGRHRSKAPTPRPSSLGLASSR 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12532660 12536140 + CmoCh01G016550.1 Cmo01g01655 375138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01655 665 PANTHER NISCHARIN RELATED 3 651 - -
Cmo01g01655 665 SMART LRR_typ_2 520 542 IPR003591 -
Cmo01g01655 665 SMART LRR_typ_2 431 454 IPR003591 -
Cmo01g01655 665 SMART LRR_typ_2 475 498 IPR003591 -
Cmo01g01655 665 SMART LRR_sd22_2 475 497 - -
Cmo01g01655 665 SMART LRR_sd22_2 453 474 - -
Cmo01g01655 665 SMART LRR_sd22_2 498 519 - -
Cmo01g01655 665 SMART LRR_sd22_2 520 541 - -
Cmo01g01655 665 MobiDBLite consensus disorder prediction 607 638 - -
Cmo01g01655 665 MobiDBLite consensus disorder prediction 607 665 - -
Cmo01g01655 665 ProSiteProfiles Leucine-rich repeat profile. 500 521 IPR001611 GO:0005515
Cmo01g01655 665 MobiDBLite consensus disorder prediction 367 386 - -
Cmo01g01655 665 ProSiteProfiles Leucine-rich repeat profile. 477 499 IPR001611 GO:0005515
Cmo01g01655 665 Gene3D Ribonuclease Inhibitor 380 496 IPR032675 -
Cmo01g01655 665 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 651 - -
Cmo01g01655 665 ProSiteProfiles Leucine-rich repeat profile. 522 543 IPR001611 GO:0005515
Cmo01g01655 665 Gene3D Ribonuclease Inhibitor 497 592 IPR032675 -
Cmo01g01655 665 ProSiteProfiles Leucine-rich repeat profile. 455 476 IPR001611 GO:0005515
Cmo01g01655 665 Pfam Leucine-rich repeat 435 539 - -
Cmo01g01655 665 SUPERFAMILY Outer arm dynein light chain 1 422 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01655 - - - csv:101212929 1046.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01655 Cmo09g00548 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01655 Cmo-Chr1:12532660 Cmo11g00325 Cmo-Chr11:1574165 1.26E-09 dispersed
Cmo19g00981 Cmo-Chr19:8820687 Cmo01g01655 Cmo-Chr1:12532660 1.16E-76 transposed
Cmo01g01655 Cmo-Chr1:12532660 Cmo09g00548 Cmo-Chr9:2615867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01655 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 1.652151 0.870764 1.273737 0.0 0.0 0.0