Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01675 ATGGATCTTCCTCCTGAAGTCGACAATTACATCAAGGAAACAATAGATCATTCATTAGGTCTACCTGTGTCGGCGGAGACGCTGGAGTTGAAGCTTCGGGTCTCTGAGGATGCTCAGAGGCGGCTTGGTCAATATTGCGATGTTCTGCAGTCCAAAATCAAAGAAAAAGATCTGTTGATTGAGCGTAGTAAGGCTGAAGCGACAATGAACGCACAAGCTTTGAAGAAATTTGTCGAGGAGAATCGAAAACTGGCTACGGAGTGCCTTTTTCTTACAGGTCAATGTGAAAAATGGGAGAGAGAGTGCTCTTTATATGATCACGACCGAGATGCATTGATGGAGTTCGGGAACGAGGCGGATCAGCGTGCAAGGGAGGCTGAGAATCGTTTTCACGAATTGCAGGAAGAGGTTAGACGGTTGTCAGATGAACTGCTGTTCTTTAAGCATGAATACGAGATGAAAAGGGTTGATTCATCTTCTGATGGTAGAGATTTGGAGGATAACTTACTCGAGTTGGTTTTGCCTACATGTAATTGTAATGATAGATCTACAGCTGCTCATGCATTTTTAGAAGCAAACAGTGATCAAGATTCAAGCCAGAAGCTTATGAAAATGTGGAATTGCTTAAAGCCTTCAACTCAAAAGGCTCTATCACTAGCTGCTTACGTGAAGGCCGTCGAGAAGGATTGTGAACATCTGAGAGCAAATCTTCAAAAAGCTGAAGAAGAGGTGAAGTTGTTGTATGAAGATAATATGCTTCTTGACGAGGAGAACAAGAGGTTGCTGAAACGGCACCAGGAAGATATAATTCAACATTCAGGCGATAAGCAGGCCAACAGTGGGTCTGCCGCCAAGCTCTGTGTTGCTTTCAAACCGGAAGAAACTGAACGGAGAGCGGTGAATAATATCCCAGCAATGGCTCTGGTTCGCCTTCCTTGTTCTTCATCTTCCACTTTCCTCCGCTCTAAACAACAGCATCCGATCTTTCTCGCACCTCTCTCGTGTTCGCAAAATCCATCTTCTTCCATCAATGGCGACATCAATCTCTCTCTTTATCGCTCTTCTTCCTCTCTTCTTTCTACTTCCTTTGACCACAATCCCTTCATTTTCACTGAAGGTAACAAATCTAGGAGGTTGATTTTCCATTTCGCTTCAACCTCCCAAGACGATGCAGTAGCGAGCTCTCCTTCTGATACTGAGGAATTTTCTCGAACCAGATTGCTTGCTCAGAACGTGCCTTGGAATTCTACTCCTGAGGATATTCGTTCTCTGTTCGAGAAATTTGGTACTGTTCTGGACGTGGAGCTTTCAATGTATAACAAGATCAGAAACAGGGGATTGGCGTTTGTAACGATGAGATCACCTGAAGAAGCTCTTGCAGCACTCAATAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTAAAGCTCAATTATGCTAAGCTTAAAAAAGAGAAACCCTCCCCTACCGTGAAGCCAAAACCAGTTACGTTCAATTTGTTTGTGGCTAATTTATCATTTGAAGCAAGAGCAAAGGACCTTAGGGAGTTCTTTGATTCAGGGAGTGGTAATTTAGTTTCTGCACAAATTATTTTTCATGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAAAGGGATGCTGAAGCAGCTCTTTCTGAGTTCCAAGGGAAGATTTTCATGGGAAGAGCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCTCAATCTGAAGTTACATCAACTGATGGCATGGTGCTATCTAATGCTGCTGCTGAAGTTTAA 1818 43.07 MDLPPEVDNYIKETIDHSLGLPVSAETLELKLRVSEDAQRRLGQYCDVLQSKIKEKDLLIERSKAEATMNAQALKKFVEENRKLATECLFLTGQCEKWERECSLYDHDRDALMEFGNEADQRAREAENRFHELQEEVRRLSDELLFFKHEYEMKRVDSSSDGRDLEDNLLELVLPTCNCNDRSTAAHAFLEANSDQDSSQKLMKMWNCLKPSTQKALSLAAYVKAVEKDCEHLRANLQKAEEEVKLLYEDNMLLDEENKRLLKRHQEDIIQHSGDKQANSGSAAKLCVAFKPEETERRAVNNIPAMALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDHNPFIFTEGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKEKPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFVAFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVTSTDGMVLSNAAAEV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12643060 12649020 - CmoCh01G016750.1 Cmo01g01675 375158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01675 605 Coils Coil 116 150 - -
Cmo01g01675 605 Gene3D - 371 486 IPR012677 -
Cmo01g01675 605 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 306 594 - -
Cmo01g01675 605 CDD RRM_SF 411 478 - -
Cmo01g01675 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 571 IPR000504 GO:0003723
Cmo01g01675 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 410 476 IPR000504 GO:0003723
Cmo01g01675 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 482 IPR000504 GO:0003723
Cmo01g01675 605 SUPERFAMILY RNA-binding domain, RBD 488 580 IPR035979 GO:0003676
Cmo01g01675 605 SMART rrm1_1 406 478 IPR000504 GO:0003723
Cmo01g01675 605 SMART rrm1_1 499 573 IPR000504 GO:0003723
Cmo01g01675 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 577 IPR000504 GO:0003723
Cmo01g01675 605 PANTHER OS08G0483200 PROTEIN 306 594 - -
Cmo01g01675 605 Gene3D - 487 595 IPR012677 -
Cmo01g01675 605 Coils Coil 223 257 - -
Cmo01g01675 605 SUPERFAMILY RNA-binding domain, RBD 394 488 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01675 - - - cmax:111480210 555.444
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01675 Cmo09g00564 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01675 Cmo-Chr1:12643060 Cmo14g00365 Cmo-Chr14:1694864 4.36E-06 dispersed
Cmo16g00616 Cmo-Chr16:3004168 Cmo01g01675 Cmo-Chr1:12643060 1.65E-08 dispersed
Cmo16g01221 Cmo-Chr16:8748362 Cmo01g01675 Cmo-Chr1:12643060 1.61E-38 transposed
Cmo01g01675 Cmo-Chr1:12643060 Cmo09g00564 Cmo-Chr9:2734284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g455 . . . . Bpe02g00126 . . Bma01g02600 . . Cma01g01629 Cma09g00580 Car01g01238 Car12g00159 . Cpe06g00442 . Bhi04g00784 Tan02g2423 Cmetu03g0174 . Hepe10g0472 . Lcy13g1537 Cla08g01131 Cam08g1588 Cec08g1158 Cco08g1284 Clacu08g1288 . Cre08g1070 . . . . Lsi04g02260 Csa03g04471 Chy04g00230 . . . Bda11g00781 . . . . . Sed05g1576 Cmo01g01675 Cmo09g00564 . . . Car09g00509 . Cpe02g00354 Bhi09g02472 Tan01g3821 Cmetu04g1707 . Hepe01g2152 Mch11g0690 . Cla11g01405 Cam11g1462 Cec11g1490 Cco11g1486 Clacu11g1623 Cmu11g1440 Cre11g1859 . . . Cme04g00256
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01675 Cmo_Chr01 FPKM 25.053434 26.406357 34.269836 33.730606 26.492195 26.263384 27.510735 49.123158 48.397552 51.072647