Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01684 ATGGAGGATTTCGCCTTCCACGATGGTAACGTCTGCGGTTTGCTCGAGAGCAGGCACATCAACTTTCGTCAAAACCCCAACTATAGTTTGCAGATGCACTCATCACTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGGTCGGTATAGATTTTAGTTTCTATGGGCACCAGGGGTGTGTTAATGCTGTCGCCTGGAATTCTAGTGGTTCTCTTCTAATATCTGGATCAGATGATACTCGGACTATATGTAGTGGATATCAGGTGGTTATTCTTGAAGATTTAACCAGTAAACCTGTTATTATAGATTATTTGACTCTTTATGAAAATATAAACATCTGGAACTATTCTGGTCAAAAGCTATTGCACTCTGTAGAGACTGGGCATTCTGCAAACATATTTTGTACAAAATTTGTTCCTGAAACTTCTGATGAGCTTGTGGTCTCGGGAGCTGGGGATGCAGAGGTTGAAATAGGGAATCCAAATGTAGTATGGAGTGCTAGTGAGGATGGTACTCTTAGACAGCATGATTTTCGAGAGGGCATGTCTTGTCCTCCTGATGGAGCCTCTCACCAAGAATGTCATAATGTTCTTCTTGATTTGCGGTGTGGAGCAAAGAGGTCTCTGGCTGATCCTCCCAGACAAACCCTAGCTTTAAAATCTTGTGACATTAGTACCACTAGGCCTCATTTACTTCTAGTTGGTGGAAGTGATGCATTTGCACGGTTATATGATAGAAGGATGCTGCCACCCTTGTCTTCCAGCCAGAAAAGGATGACACCACCTCCTTGTGTTAACTACTTCTGTCCAATGCATCTCTCGGATCGGGTTCGCTCGGGTTTGCATCTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATCTTGCTTAGCTACAGTGGAGAACATGTATATTTGATGAACATGATGGCTGTTTCAAAGCCAAGTTATGTTGATTTTCTTAAGAAAGCATCTTATTGTGAATTTTCTTTTCGAGTTTGCAATCAGTGTTTTATTTATCAGTTAGATAATGCCAACTATTCTGGGCAAAGTACGATGCAATATACATCAGGAGATGTATCTAAGTTAATGAGCTTCACTCCCATACTCAATGGATTGGAATTGCAGTATCCTATTTCCAATTTATCCAATAGTCTGCCTCTTGATAAATGCAGAAAATTATTGCAAATTGCTGAAAAATGCACGGAGGTTGGGAACTACTTTGGTGGAATTGAGGCATGCAATGAAATTTTGGATGGATATGGTCGTAATATTGGAGTTATTTTCAAGCATGATTCATTATGCACACGTGCTGGTTTATTACTCAAGCGGAAGTGGAAAAATGATGTTCATATGGCAATAAGAGATTGTTACAGTGCTAGGAAAATTGATCAGTCCTCTTTCAGAGCACATTACTACATGTCTGAAGCTTTATCACAGCTGGGTAGACATAAGGAAGCCCTAGATTTTGCGTTTGCTGCTCAGTATTTAGCCCCATCTAATCCTGAAGTGGCGGAGAAGGTGGAAAGTGTAAAGAGGGACCTTGCTGCAGCTGAATCAGAAAAATCAAATAAAAGCAATGATGGAGCTCTAAGATCAGCACCGTTAGGTGGAGTATTATCATTAAGTGACTTTCTTTACCGCTCAGATGCAAATAGTGATGTCTCACAAGATGGGCTGAGATCGGAAAGAGAAGATTCTGACTATGACGAAGAGGTGGAGCTGGACTTTGAAACTTTATCAGGTGATGAAGCCCATGATGTTGATTCCAATGTTCTACAAGGAAGTTTAAATCTTAGAATACATAGACGAATTGATCCTGCGAGAGAAAGGGTTGGCGCAAATGGCACCTGTGGGTCTCCTTCATCATCACAAAATGATGGAATACTTTATCAGGTTCCACCTGAACCCGTCATTGATATGAAGCAAAGATATGTTGGTCATTGTAATATCGGAACTGATATTAAACAAGCTAGTTTTCTCGGGCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGGAGATGGTTTATTTGGGAAAAAGGAACCGGTAGACTGATTAAAATTCTCGTTGGAGATGGAGCTGTTGTGAACTGCGTGCAAAGTCATCCATTTGACTGTGCCATTGCTACTAGTGGGATCGACAATACCATAAAGCTATGGACTCCAACTGCTCCCATCCCTTCAGTTGTTGCTGGTGGAGCGGTCGGACCGCAGGCTGCCGATGTGTTGGCTGCAATAGAGAACAATCAGCGCAGACTGTGCCGTAATAGAGAAGCCATACTGCCTTTTGAAATTTTAGAACGGTTTAGGATGCATGATTTCTCAGAAGGGAGCCTTCATCCATTTGAATGTGCTCAGAGTTGA 2370 41.81 MEDFAFHDGNVCGLLESRHINFRQNPNYSLQMHSSLIQRLSQEKELEVGIDFSFYGHQGCVNAVAWNSSGSLLISGSDDTRTICSGYQVVILEDLTSKPVIIDYLTLYENINIWNYSGQKLLHSVETGHSANIFCTKFVPETSDELVVSGAGDAEVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISTTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMTPPPCVNYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNMMAVSKPSYVDFLKKASYCEFSFRVCNQCFIYQLDNANYSGQSTMQYTSGDVSKLMSFTPILNGLELQYPISNLSNSLPLDKCRKLLQIAEKCTEVGNYFGGIEACNEILDGYGRNIGVIFKHDSLCTRAGLLLKRKWKNDVHMAIRDCYSARKIDQSSFRAHYYMSEALSQLGRHKEALDFAFAAQYLAPSNPEVAEKVESVKRDLAAAESEKSNKSNDGALRSAPLGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDSNVLQGSLNLRIHRRIDPARERVGANGTCGSPSSSQNDGILYQVPPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKGTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPIPSVVAGGAVGPQAADVLAAIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12686449 12699040 - CmoCh01G016840.1 Cmo01g01684 375167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01684 789 Gene3D Tetratricopeptide repeat domain 387 532 IPR011990 GO:0005515
Cmo01g01684 789 SUPERFAMILY TPR-like 387 506 IPR011990 GO:0005515
Cmo01g01684 789 SUPERFAMILY WD40 repeat-like 52 724 IPR036322 GO:0005515
Cmo01g01684 789 MobiDBLite consensus disorder prediction 552 571 - -
Cmo01g01684 789 Gene3D - 571 727 IPR015943 GO:0005515
Cmo01g01684 789 Pfam WD domain, G-beta repeat 686 722 IPR001680 GO:0005515
Cmo01g01684 789 Pfam WD domain, G-beta repeat 53 80 IPR001680 GO:0005515
Cmo01g01684 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 722 IPR001680 GO:0005515
Cmo01g01684 789 Gene3D - 39 363 IPR015943 GO:0005515
Cmo01g01684 789 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 25 789 - -
Cmo01g01684 789 Coils Coil 501 528 - -
Cmo01g01684 789 SMART WD40_4 638 681 IPR001680 GO:0005515
Cmo01g01684 789 SMART WD40_4 47 86 IPR001680 GO:0005515
Cmo01g01684 789 SMART WD40_4 684 723 IPR001680 GO:0005515
Cmo01g01684 789 SMART WD40_4 205 245 IPR001680 GO:0005515
Cmo01g01684 789 SMART WD40_4 118 177 IPR001680 GO:0005515
Cmo01g01684 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 79 IPR001680 GO:0005515
Cmo01g01684 789 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 25 789 IPR045151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01684 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - csv:101206836 1258.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01684 Cmo09g00572 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01684 Cmo-Chr1:12686449 Cmo20g00495 Cmo-Chr20:2343070 3.66E-16 dispersed
Cmo01g01684 Cmo-Chr1:12686449 Cmo09g00572 Cmo-Chr9:2783313 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01684 Cmo_Chr01 FPKM 2.037879 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0