Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01688 ATGAACAGCAGTAGAGGTTGGAAACGTGCAATTCATGCAGGGAGGGTTCCATCCAGTTCTTCTTTTGCTGCAGATGGGTCTCTCAATGATTTATTCGCTGCAAAAGCCATTTGCAAATTCACCTCAAATCCTTCTTACTGCATCTCTGTGCTTCAAAAATCCTCAGGCAATGTCTATGAATCAGGTAGGTTTTCGATGCGTCGGTCTTTGTCTAAAGCATCTGCATTCTTGAATTTGATTGAGAAGCATCTTCAAAACAGTTCCACTCTACCAAAATCTGTCACTGGTGGTCTTAAAGATTGCCAATATCTTGCCCAACTAAACATTAATTTCTTGTCGAACTCTTTTCGGGCTGTCAATGGCACTGATAAAAAGCTAACCTACTCAAAAGCTGATTATATCCAGAGTCTTCTAAGTGCTATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAATACCGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTCTTAGCACCACTCATTGATTGTACCAAATCATACAGTCTTTCTCTAGATCTTTTTACAAAAGGCTGGGTGCCTAGGAATAGAAACAGAACACGTGATCATCCTGTGACAAAACACCTCCGGTTTAGGAAAGGTCCGTTGCCATTGAGAATGTCGAAACATGACCGTGCTGTTTATAATTCGGTGGCGAATCGAAGAAGGCTTTTATCTTCTTCAGATGATGGAATTTTGGTTAATGGTATTGTAGTTGTGAGTCAAGATGGTACAGGAAACTTCCTCACCATCACAGAAGCTGTTAATGCAGCTCCAAACAACTCTCTTGCTGTCAATGGCTACTTCTTGATTTACATCGCAGCTGGTGTTTACCAAGAGTATGTGTCGATCCCTTCAAAGAAGAAGTACTTGCTCATGATTGGAGATGGTATAAATCAGACCATCATTACGGGCAACCAAAGCGTCGCTGACGGCTGGACTACCTTCAACAGTGCAACTTTTGCTGTGGCAGCAGAAGGATTCATGGCAGTTAACATAACCTTCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCAATGAGAAGCGGGGCCGATATGTCCATCTTCTACAGCTGCAGCTTTGAGGGTTACCAAGACACCTTATACACTCACTCCCTAAGACAATTCTTCAGAGAATGTGACATTTATGGCACAGTGGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAAAACTGCAACATATATCCCCGTCTACCGCGTTCTGGACAGACCAACATGATCACTGCTCAAGGTCGATCAGATCCGAACCAAAACACCGGTACTTCGATCCACAACTGCACGATCCGAGCCACGAGCGATTTAGCTGCAAGCAAGAGTTACATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTTTATATGCAGACATTCATTGATGGGTTCATAAATCCTGCTGGTTGGGATCCATGGTCAGGGGAATACTTGAGCACATTGTATTATGCAGAGTATAATAATTCAGGAGCTGGATCAAATACAAAGAACAGAGTCACCTGGCCTGGTTACCATGTCATTTCTAATGCTACTGAGGCTTCTAATTTTACAGTTTCAAACTTTCTGGTTGGGGATGCGTGGCTGCCTCCAACTGGTGTGCCCTACACTGGAGGCTTCATATAA 1683 43.02 MNSSRGWKRAIHAGRVPSSSSFAADGSLNDLFAAKAICKFTSNPSYCISVLQKSSGNVYESGRFSMRRSLSKASAFLNLIEKHLQNSSTLPKSVTGGLKDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRNRTRDHPVTKHLRFRKGPLPLRMSKHDRAVYNSVANRRRLLSSSDDGILVNGIVVVSQDGTGNFLTITEAVNAAPNNSLAVNGYFLIYIAAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNQSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVAMRSGADMSIFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRSGQTNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASKSYMNKTYLGRPWKQYSRTVYMQTFIDGFINPAGWDPWSGEYLSTLYYAEYNNSGAGSNTKNRVTWPGYHVISNATEASNFTVSNFLVGDAWLPPTGVPYTGGFI 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12715396 12718364 - CmoCh01G016880.1 Cmo01g01688 375171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01688 560 SUPERFAMILY Pectin lyase-like 242 558 IPR011050 -
Cmo01g01688 560 PANTHER PECTINESTERASE 25 558 - -
Cmo01g01688 560 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cmo01g01688 560 PANTHER PECTINESTERASE 25 558 - -
Cmo01g01688 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 185 IPR035513 -
Cmo01g01688 560 Pfam Pectinesterase 246 545 IPR000070 GO:0030599|GO:0042545
Cmo01g01688 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
Cmo01g01688 560 Pfam Plant invertase/pectin methylesterase inhibitor 35 162 IPR006501 GO:0004857
Cmo01g01688 560 Gene3D - 242 559 IPR012334 -
Cmo01g01688 560 CDD PMEI-like_3 36 187 - -
Cmo01g01688 560 SMART PMEI_2 29 182 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01688 Cmo09g00373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01688 Cmo-Chr1:12715396 Cmo17g01038 Cmo-Chr17:8815401 0 dispersed
Cmo19g01049 Cmo-Chr19:9121834 Cmo01g01688 Cmo-Chr1:12715396 2.19E-87 dispersed
Cmo01g01688 Cmo-Chr1:12715396 Cmo08g00431 Cmo-Chr8:2675526 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01688 K01051 - csv:101205879 973.385