Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01693 ATGTTCCCAAAACCCCACCATCAACCACCGCCCCATTTCCAGCCCTTTCCCCGCTCCTTCGCCGTCGCGGCCACTCCGCCACCGCGCGATTCTTCCACCGCCGCCGATGACGATTCCACCACCGGCCACTCGCCTCTCACGCACGCTATGCTCCCTAAAGAACCGGCCTCCGGGGGCGACGGAGCTTCCATCGAGGTCGTTCGCCGTCCCCGTGGTCGACCTCCTGGATCCAAGAACAAGCCGAAGCCAGCCGCCGTTGTCGTCGCTGCACGCGACGCCGAGCCGGCGATGAGTCCTTATGTGCTCGAAGTTCCTGGCGGCAGTGATATCGTCGAGGCTATTTCCCGATTCTGCCGCCGCAGAAACACAGGGCTCTGTGTTCTCAACGCTTATGGAACCGTCGCCGATGTCACACTCCGGCAGCCGTCCTCATCTCCGGTGGCGACCGTCACTTTCCATGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTTGTTCCTCATACGACGTCGTTTCCAATCCCTAACGGATTCACCATCACGCTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGTTTGGTTGCCGGAGCTTTAATCGGCGCCGGAACCGTCTTTATAATAGCTGCCTCATTCAACAATCCCTCCTATCAACGGCTTCCATCAGAGGACGAGGTCAGAAAATCAGGCTTCAGCGATGTCGAAGAAGGTCACTCTCCACCGATCTCTGGTGGAAAAGATAGCGAAAACACCAACGCCGCAGCGGATACCTGCGGCCTGCTGCCGATGTACAGTACTCACTCTTCCTCCGACGCAATATGGTCTCGACAACCAGCGGCGCCGCCGCACCATCGCCAGTACTAA 861 59.12 MFPKPHHQPPPHFQPFPRSFAVAATPPPRDSSTAADDDSTTGHSPLTHAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAARDAEPAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCVLNAYGTVADVTLRQPSSSPVATVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGALIGAGTVFIIAASFNNPSYQRLPSEDEVRKSGFSDVEEGHSPPISGGKDSENTNAAADTCGLLPMYSTHSSSDAIWSRQPAAPPHHRQY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12735579 12736439 - CmoCh01G016930.1 Cmo01g01693 375176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01693 286 Gene3D - 98 233 - -
Cmo01g01693 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 28 279 - -
Cmo01g01693 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cmo01g01693 286 MobiDBLite consensus disorder prediction 1 84 - -
Cmo01g01693 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cmo01g01693 286 MobiDBLite consensus disorder prediction 218 253 - -
Cmo01g01693 286 MobiDBLite consensus disorder prediction 1 16 - -
Cmo01g01693 286 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cmo01g01693 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 279 IPR014476 GO:0003680
Cmo01g01693 286 MobiDBLite consensus disorder prediction 32 46 - -
Cmo01g01693 286 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01693 Cmo-Chr1:12735579 Cmo15g00111 Cmo-Chr15:536548 1.19E-47 dispersed
Cmo10g00931 Cmo-Chr10:4648077 Cmo01g01693 Cmo-Chr1:12735579 2.49E-45 transposed
Cmo01g01693 Cmo-Chr1:12735579 Cmo09g00578 Cmo-Chr9:2828162 3.38E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01693 - - jre:109013700 291.967