Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01696 ATGGAGAACTTGGACGGGAAATCAGCAGATTCTTCGCAATCTGTTCGTGTCGCTGTTAATATTAGGCCTTTGATTACACCGGAGCTTATGGTTGGATGTACTGATTGTATTACAGTTGTGCCTGGAGAACCTCAGGTTCAAATTGGATCTCATGTGTTCACATATGATAATGTGTACGGTAGTGCTGGATCGCCTTGTTATGCATTATACGACGACTGTGTTGCTCCATTAGTTGACGCACTATTTCAGGGTTATAATGCCACTGTTCTGGCTTATGGACAGACGGGGTCCGGAAAGACTTACACAATGGGAACAAATTATAGTGGCGAAGGAAGTAAGGATGGAGTTATACCGAAAGTAATGGAAAATATATTTAAAAAGGTCAAGAAAATGGAGGATTCTACAGAATTCTTGATCAGAGTTTCATTTATTGAGATATTCAAGGAAGAAGTGTTTGATTTGCTCGACGCAAATGCTTGCCCCAACACGAAGGCTGAAGGAACAAAGCCTTATGCTCCTCCGCGAGTTCCAATACAAATAAGAGAAACTGTGAATGGTGGGATTACGCTTGTTGGTGTCACCGAGGCGGAGGTTCGGACCACAGAAGAAATGACATCTCACTTGTCCTGTGGTTCCTTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCGAGTCGATCACATGCCATCTTTACGATTACCATGGAGCAAAAGAAAAAGCCGAAGCAAGGCATGTCTCATGATGATTCATGTGACGACATTCTATGTGCAAAGCTACATTTGGTGGATCTTGCAGGATCTGAAAGAGCAAAACGAACCGGTGCAGATGGCATGCGCTTTAAAGAAGGTGTTCACATCAACAAAGGCCTTTTGGCTTTAGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGGTGTCATGTTCCCTACCGTGATAGCAAATTAACACGTTTGCTACAGGATTCTCTTGGAGGCAACAGCAGAACGGTGATGATTGCTTGTGTTAGTCCTGCCGACTCAAATGCTGAGGAGACCCTGAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAGATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTATTATTCTACCGTGGTGATGCAGGTTTACCATATGAGGAGCTTCAGATTCTAAAGCACAAAATATCATTACTTGAAGCAAGCAATGGTGAGTTGTTGCGGGAGCTTCAAGAACGCCGAGTCACTTGTGATCATTTGTCTCAACGTGCTATTGATGCTCAGGTTGAGAAAGACAAGCTTGCCATGATAATTGAATCAGTGCGGAATGGAAAATCTTTAGATGAGATTGAATCCAACTTCGATAAGGATTGTGAGTTAGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTATTGCGTTTGCAAAGCTATAACAACCCAAAACTCAGTCGATATGCGGATCTAGTAGAGTCTGATGATGATAGGCCCAACTCTAGCAATATCTTATTTCCATGTTCAAATGAGTATTCGTCAGACTATGATCCTAAAGCTGTAGATATTTCAGATGGAATCGAAGATCATGAGAAGGAGCTTGAGCATTCAACAATGCAAGAAAGATTGGATAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTTCTGGTGCGGATACCTCTGTTCTTAAACAACATTATGAAAAGAAGGTCCATGAACTGGAACAAGAAAAGAGAGCGTTACAGAAAGAGATCGAGGTACTCAAATGTAATCTTTCGAACATATCTTCTACATCTGATGATGGTGCACAAAAGTTGAAGCAAGAATATCTTCAGAAGTTGAATTTCCTGGAAACCCAGGTCTCGGAGTTGAAAAAGAAACAAGATGCACAAGCTCAAATATTAAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACTGGATGAGATCCACAGAATTAAGTCCCATAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGACTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGCAGGAGAAATGAATATGAGATGCATAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACCGAAGAAGCTGCTCAGGCAACAAAAAGGCTTAAAGAACTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCAGTGGCGGAGCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCATGAACTTGAAGTCACAGTAAGAGTGCATGAAGTTCGTTCTGAATATGAGCGGCAAATGGAAGAGAGGTCGAAGATGGCCAATGAATTGACGCGGCTTAAGGAGGAAGAAGAATTGATTAGGGGAGCTAATTTAAGTGATTGTACTCGAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCTCTTGAGAACATGCTTGCTACGTCATCCAGCTCTCTGGTTTCTATGGCCTCACATTTGTCAGAGGCAGAAGAACGCGAGCGCGTTCTTGGTGGCGGTAGGGGTCGTTGGCATCAAGTTCGCTCTCTTGTAGATGCAAAGAATATAATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGATGTTTGCTATGGGATAAAGAGTTTGCTTCTAGGGAGAAGGATTCCGAAATTAGAGAGTTGAAACAAAAAATAGTGAACCTTAGCGGCATGCTTAAGAAATCAGAAGCCCAAAAGGCTGAACTTATTCATCAGAACTCAGCTTTGAAGAAGCATTCCATGCGAAGCACTTCAGATCAGATTAATAGTGGGGGACATAACTATAATTTACGCAAGCAGGATCAGCGGAGTTCTATCATTTTATTGGCAGACATGGATACCTCGGACTCAGATTACTCGGATCGTTATTCAGATGATAATGATGCCAATTACAATTGGGAGAAATCAATGAAACGACGACATACCAGAAAACAAATCATTAAAGCTAAGGGCCGTTCGAGTATGGACGTCTCAGATGACACAAACAATGCAAACAATGCAAACTTCAACTCGGATAGTTCTGGTGATGGGGTAGTTCGTGTGAGTGAGGCCACTACTGCTACCACTGCTTGCTGCCTTTGCAGCAAATTCTCTTCTTGCAAGACAACTAAGTGCCTATGTAGAGCCAATGGTGGTGCGTGTGGCTTGTCATGTGGTTGCATTCCATCTAAGTGTTCAAACAGAGGCAGTAAAAGCGAGCGGGACGAGTCGATGCAACCAGACTTAGTTGGGGATGTTGAAAATGCTACTGAAAATGGTGAAACCAATGAGGATGAGAGTCGTGACCTTGTTTCGAATGGTGCAAGGTTGCTTCAGAATGCATTGGCTGAGAGGCCAAGTGAGGCTCCTCCTGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATAGGAAACACATTGGCGAAATCGAAGTCCAACAAGCCAAACCAGAGAAAGAAATGGAGAAAATCTACAATTCAACTCATTCCTACACCACAACCATCTTCCCAACCAGAAATACCTGAGCCCATCCAGAAGACAGAGAACGACTCAAATGAGGTTGCCAACGTCCCGTTGAAACTTCCCCGAGCGATGCGATCCGCCACCGCCGCTGCCAATGGCAGCAACCTACTGAGGGAGAGGAACTCCGATCAGCCGGAAGATTCAGTTGGCGGGAACAAAGAACATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAACTGCAACAACCGTTAA 3867 42.88 MENLDGKSADSSQSVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPCYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSKDGVIPKVMENIFKKVKKMEDSTEFLIRVSFIEIFKEEVFDLLDANACPNTKAEGTKPYAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSHLSCGSLARATGSTNMNSQSSRSHAIFTITMEQKKKPKQGMSHDDSCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNFDKDCELVKSYVSKIQELEGEVLRLQSYNNPKLSRYADLVESDDDRPNSSNILFPCSNEYSSDYDPKAVDISDGIEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFSGADTSVLKQHYEKKVHELEQEKRALQKEIEVLKCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQILRQKQKSDEAAKRLLDEIHRIKSHKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARETSSGGANGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMANELTRLKEEEELIRGANLSDCTRTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGGRGRWHQVRSLVDAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSALKKHSMRSTSDQINSGGHNYNLRKQDQRSSIILLADMDTSDSDYSDRYSDDNDANYNWEKSMKRRHTRKQIIKAKGRSSMDVSDDTNNANNANFNSDSSGDGVVRVSEATTATTACCLCSKFSSCKTTKCLCRANGGACGLSCGCIPSKCSNRGSKSERDESMQPDLVGDVENATENGETNEDESRDLVSNGARLLQNALAERPSEAPPAEDGGAKRKPLSDIGNTLAKSKSNKPNQRKKWRKSTIQLIPTPQPSSQPEIPEPIQKTENDSNEVANVPLKLPRAMRSATAAANGSNLLRERNSDQPEDSVGGNKEHELIVPKRVDEKENCNNR 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12744206 12752837 + CmoCh01G016960.1 Cmo01g01696 375179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01696 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 398 IPR027417 -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1022 1056 - -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1156 1228 - -
Cmo01g01696 1288 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 1269 - -
Cmo01g01696 1288 Coils Coil 555 586 - -
Cmo01g01696 1288 ProSiteProfiles Kinesin motor domain profile. 14 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 CDD KISc_KIF4 14 365 - -
Cmo01g01696 1288 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 955 976 - -
Cmo01g01696 1288 Coils Coil 592 626 - -
Cmo01g01696 1288 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 1269 - -
Cmo01g01696 1288 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 Coils Coil 379 399 - -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1036 1056 - -
Cmo01g01696 1288 Pfam Kinesin motor domain 47 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1256 1288 - -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 956 976 - -
Cmo01g01696 1288 Coils Coil 740 767 - -
Cmo01g01696 1288 SMART kinesin_4 12 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01696 1288 Coils Coil 925 959 - -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1108 1143 - -
Cmo01g01696 1288 Gene3D Kinesin motor domain 9 397 IPR036961 -
Cmo01g01696 1288 Coils Coil 794 821 - -
Cmo01g01696 1288 MobiDBLite consensus disorder prediction 1240 1288 - -
Cmo01g01696 1288 Coils Coil 635 675 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01696 - - - cmos:111446675 2435.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01696 Cmo-Chr1:12744206 Cmo01g01880 Cmo-Chr1:13584644 0 dispersed
Cmo09g00026 Cmo-Chr9:132334 Cmo01g01696 Cmo-Chr1:12744206 2.61E-26 transposed
Cmo01g01696 Cmo-Chr1:12744206 Cmo12g00154 Cmo-Chr12:1002815 8.64E-12 wgd
Cmo01g01696 Cmo-Chr1:12744206 Cmo05g00571 Cmo-Chr5:2798930 1.52E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01696 Cmo_Chr01 FPKM 0.0 0.0 1.683619 1.040094 0.917987 1.649234 1.68364 1.875338 1.512768 1.725415