Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01702 ATGACGGTTGAGCCAAGAGTTGATGACCCAAATGACCAATTTCCGGTTGGAATGCGTGTTCTCGCCGTCGACGACGACCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGCCGGTGCCACTATCATGTCACTACGACCAATCAGGCTATTATGGCACTCAAGTTATTGAGAGATAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTGGAGATGGACCTTCCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGGATAACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTTATCAGGAGAAAGAAATTTGATCCAAAGGATCAGATGAAATCTATCAATCAGGCCAAGCTTGATTCTGAGAATGGTGAAGAAGTAGCTGATCCAAATGGGAAGTTTAAGAAGAAAAGGAAGGATCAAAACTATGATGAGGATGATGACCAGGATTATAACGGGCAAGAGGACGATGACTCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTGCATAGGAAGTTCGTAAATGCTGTTAACCAGTTGGGCATAGATAAGGCAGTGCCCAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAACGTTGCTAGTCATCTTCAGAAATATAGGCTTTATCTCAGGAGAATCAGCTGTGTAGCAAACCAACAAGCTAACATGGTGACTGCATTGAGCAGCGCCGACCCTTCGTATATGAGACTTGGTTCTCTTAACGGTATCGGGAATTTCCATTCCGTCACTGGACCTCCACCGTTTCCCAACACTGCTTATAGATCTATCCCGACCACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGCATGAATGGCCTTTCTTCCCCGGGAACCGTTCCACTGGAGTCTACATTTCAGCCAAGGCCCCGCAGTGCGAATATGTTCCGGGGAATGCTAGAGTCATCAGGACTTGATCGAGTACAACATGTTAAGCACGGCACCGTGGACGATCTCGCTCGTGCTTTTGATCAGAGAACAGTGTTTTCTGCTGCTGGTCATTTGAGTAATGACCCCTTGATTTCAGTAGTATCTGCAAGCTTGGAAAGTTCACGTCCTTCGGTAGATAGTATTCGATGCACGGGTAACGATTGGTCGAAGGCTGCTCGTTCATCTAGGATGCTCTTGCATATAGGAAATTGTGTTTCTGACATTGCTTCAAAATCTACTCAATCCCATGATTCAAGAACAGATACTCAACGTCAAGCAGCCACGAGTAGCAATCGATATGATCGAGTAATCACAAAGGTTCCCGTTCAAGATTGGAATGATCTAGAGGACGCCTATTACGACACGACCGTGGCCTGTAGCTCATCGAATTCATTCATACCAGTGAATCGTGCTGCAGGGACGTTACCAAAGCGTTTCGAAAATCAGAACACAATCTTCTCTAGAAGCAAGGATTTTAACGTGATTAGTCGAGCAAATGATCTCGATCGTGCAATGGTGGATCACGATCAATTCAAGAAATCGTCTATCGAGACATCGATCATGTTGAAACAAGGAGTTTTGTATGATCATCAGCAAAAAATGCAAGCTAGATTTTGTTCAAGTAACTGTGGTTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGTACAAGATGATGCAAAATTATTGGAAGGAGATTTTGGATGTGATAATTTTCCTATTGGAACGTGCACGTGCTTGTGA 1833 44.46 MTVEPRVDDPNDQFPVGMRVLAVDDDPTCLLILETLLRRCHYHVTTTNQAIMALKLLRDNKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMKSINQAKLDSENGEEVADPNGKFKKKRKDQNYDEDDDQDYNGQEDDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRISCVANQQANMVTALSSADPSYMRLGSLNGIGNFHSVTGPPPFPNTAYRSIPTTGMLGRLNTPACMGMNGLSSPGTVPLESTFQPRPRSANMFRGMLESSGLDRVQHVKHGTVDDLARAFDQRTVFSAAGHLSNDPLISVVSASLESSRPSVDSIRCTGNDWSKAARSSRMLLHIGNCVSDIASKSTQSHDSRTDTQRQAATSSNRYDRVITKVPVQDWNDLEDAYYDTTVACSSSNSFIPVNRAAGTLPKRFENQNTIFSRSKDFNVISRANDLDRAMVDHDQFKKSSIETSIMLKQGVLYDHQQKMQARFCSSNCGSLEDIACAMMKQVQDDAKLLEGDFGCDNFPIGTCTCL 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12766984 12774034 + CmoCh01G017020.1 Cmo01g01702 375185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01702 610 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Cmo01g01702 610 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cmo01g01702 610 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 583 IPR045279 GO:0009736
Cmo01g01702 610 SMART REC_2 18 130 IPR001789 GO:0000160
Cmo01g01702 610 MobiDBLite consensus disorder prediction 149 198 - -
Cmo01g01702 610 CDD REC_typeB_ARR-like 20 134 - -
Cmo01g01702 610 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cmo01g01702 610 PIRSF RR_ARR_type-B 1 608 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo01g01702 610 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Cmo01g01702 610 SUPERFAMILY CheY-like 17 142 IPR011006 -
Cmo01g01702 610 MobiDBLite consensus disorder prediction 439 461 - -
Cmo01g01702 610 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cmo01g01702 610 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 583 - -
Cmo01g01702 610 Gene3D - 17 153 - -
Cmo01g01702 610 Gene3D - 194 257 - -
Cmo01g01702 610 MobiDBLite consensus disorder prediction 156 179 - -
Cmo01g01702 610 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01702 Cmo-Chr1:12766984 Cmo11g00476 Cmo-Chr11:2328507 6.57E-140 dispersed
Cmo04g02181 Cmo-Chr4:15984868 Cmo01g01702 Cmo-Chr1:12766984 3.05E-16 dispersed
Cmo11g00397 Cmo-Chr11:1975055 Cmo01g01702 Cmo-Chr1:12766984 2.23E-59 dispersed
Cmo01g01702 Cmo-Chr1:12766984 Cmo09g00426 Cmo-Chr9:1898549 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9134 PF00072 Response_reg 1.80E-22 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01702 - K14491 cpep:111788137 1153.66