Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01702 | ATGACGGTTGAGCCAAGAGTTGATGACCCAAATGACCAATTTCCGGTTGGAATGCGTGTTCTCGCCGTCGACGACGACCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGCCGGTGCCACTATCATGTCACTACGACCAATCAGGCTATTATGGCACTCAAGTTATTGAGAGATAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTGGAGATGGACCTTCCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGGATAACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTTATCAGGAGAAAGAAATTTGATCCAAAGGATCAGATGAAATCTATCAATCAGGCCAAGCTTGATTCTGAGAATGGTGAAGAAGTAGCTGATCCAAATGGGAAGTTTAAGAAGAAAAGGAAGGATCAAAACTATGATGAGGATGATGACCAGGATTATAACGGGCAAGAGGACGATGACTCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTGCATAGGAAGTTCGTAAATGCTGTTAACCAGTTGGGCATAGATAAGGCAGTGCCCAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAACGTTGCTAGTCATCTTCAGAAATATAGGCTTTATCTCAGGAGAATCAGCTGTGTAGCAAACCAACAAGCTAACATGGTGACTGCATTGAGCAGCGCCGACCCTTCGTATATGAGACTTGGTTCTCTTAACGGTATCGGGAATTTCCATTCCGTCACTGGACCTCCACCGTTTCCCAACACTGCTTATAGATCTATCCCGACCACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGCATGAATGGCCTTTCTTCCCCGGGAACCGTTCCACTGGAGTCTACATTTCAGCCAAGGCCCCGCAGTGCGAATATGTTCCGGGGAATGCTAGAGTCATCAGGACTTGATCGAGTACAACATGTTAAGCACGGCACCGTGGACGATCTCGCTCGTGCTTTTGATCAGAGAACAGTGTTTTCTGCTGCTGGTCATTTGAGTAATGACCCCTTGATTTCAGTAGTATCTGCAAGCTTGGAAAGTTCACGTCCTTCGGTAGATAGTATTCGATGCACGGGTAACGATTGGTCGAAGGCTGCTCGTTCATCTAGGATGCTCTTGCATATAGGAAATTGTGTTTCTGACATTGCTTCAAAATCTACTCAATCCCATGATTCAAGAACAGATACTCAACGTCAAGCAGCCACGAGTAGCAATCGATATGATCGAGTAATCACAAAGGTTCCCGTTCAAGATTGGAATGATCTAGAGGACGCCTATTACGACACGACCGTGGCCTGTAGCTCATCGAATTCATTCATACCAGTGAATCGTGCTGCAGGGACGTTACCAAAGCGTTTCGAAAATCAGAACACAATCTTCTCTAGAAGCAAGGATTTTAACGTGATTAGTCGAGCAAATGATCTCGATCGTGCAATGGTGGATCACGATCAATTCAAGAAATCGTCTATCGAGACATCGATCATGTTGAAACAAGGAGTTTTGTATGATCATCAGCAAAAAATGCAAGCTAGATTTTGTTCAAGTAACTGTGGTTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGTACAAGATGATGCAAAATTATTGGAAGGAGATTTTGGATGTGATAATTTTCCTATTGGAACGTGCACGTGCTTGTGA | 1833 | 44.46 | MTVEPRVDDPNDQFPVGMRVLAVDDDPTCLLILETLLRRCHYHVTTTNQAIMALKLLRDNKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMKSINQAKLDSENGEEVADPNGKFKKKRKDQNYDEDDDQDYNGQEDDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRISCVANQQANMVTALSSADPSYMRLGSLNGIGNFHSVTGPPPFPNTAYRSIPTTGMLGRLNTPACMGMNGLSSPGTVPLESTFQPRPRSANMFRGMLESSGLDRVQHVKHGTVDDLARAFDQRTVFSAAGHLSNDPLISVVSASLESSRPSVDSIRCTGNDWSKAARSSRMLLHIGNCVSDIASKSTQSHDSRTDTQRQAATSSNRYDRVITKVPVQDWNDLEDAYYDTTVACSSSNSFIPVNRAAGTLPKRFENQNTIFSRSKDFNVISRANDLDRAMVDHDQFKKSSIETSIMLKQGVLYDHQQKMQARFCSSNCGSLEDIACAMMKQVQDDAKLLEGDFGCDNFPIGTCTCL | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12766984 | 12774034 | + | CmoCh01G017020.1 | Cmo01g01702 | 375185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01702 | 610 | SUPERFAMILY | Homeodomain-like | 195 | 255 | IPR009057 | - | |
Cmo01g01702 | 610 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 198 | 251 | IPR006447 | GO:0003677 | |
Cmo01g01702 | 610 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 583 | IPR045279 | GO:0009736 | |
Cmo01g01702 | 610 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160 | |
Cmo01g01702 | 610 | MobiDBLite | consensus disorder prediction | 149 | 198 | - | - | |
Cmo01g01702 | 610 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Cmo01g01702 | 610 | Pfam | Myb-like DNA-binding domain | 200 | 250 | IPR001005 | - | |
Cmo01g01702 | 610 | PIRSF | RR_ARR_type-B | 1 | 608 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo01g01702 | 610 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 195 | 254 | IPR017930 | - | |
Cmo01g01702 | 610 | SUPERFAMILY | CheY-like | 17 | 142 | IPR011006 | - | |
Cmo01g01702 | 610 | MobiDBLite | consensus disorder prediction | 439 | 461 | - | - | |
Cmo01g01702 | 610 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160 | |
Cmo01g01702 | 610 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR10 | 1 | 583 | - | - | |
Cmo01g01702 | 610 | Gene3D | - | 17 | 153 | - | - | |
Cmo01g01702 | 610 | Gene3D | - | 194 | 257 | - | - | |
Cmo01g01702 | 610 | MobiDBLite | consensus disorder prediction | 156 | 179 | - | - | |
Cmo01g01702 | 610 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01702 | Cmo-Chr1:12766984 | Cmo11g00476 | Cmo-Chr11:2328507 | 6.57E-140 | dispersed | |
Cmo04g02181 | Cmo-Chr4:15984868 | Cmo01g01702 | Cmo-Chr1:12766984 | 3.05E-16 | dispersed | |
Cmo11g00397 | Cmo-Chr11:1975055 | Cmo01g01702 | Cmo-Chr1:12766984 | 2.23E-59 | dispersed | |
Cmo01g01702 | Cmo-Chr1:12766984 | Cmo09g00426 | Cmo-Chr9:1898549 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9134 | PF00072 | Response_reg | 1.80E-22 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01702 | - | K14491 | cpep:111788137 | 1153.66 |