Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01711 ATGGCCTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAAGTCTATATTGGAGGTATCGTGGGACAACTTCGTGAAAGTCTCACCGACACTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGAATCAAAGCCTCATCACTAATATATTATCTATGTATGATATGACTGTCATGGACTATCCTCGACACTATGAAGGTTGCCCTCTTCTCACCATGGAGATGATCCACCACTTCTTAAGATCCTGTGAAAACTGGCTCTCACTTATGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGATGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTATAGGAAGCAGTATGCTGGGGAGCAGAAAATTTTGGACATGATCTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCGCAATTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGACTTATTCCTAATATGGATGGTGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGGTGACCGAACCTCCAAAGTATTGTTCTCAACACCCAAAAGGAGTAAACTTGTTCGCCAGTATAAGCAGGTTGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTTTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGGGATGACATCGATATCTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAATGCATCGCGTATTTCAATTGAATTGCCGAATATTGAGGAGAAAGAAGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGAATGGCTAAGCCCCAAGGCAGAAGCAGCTCTTACTGCGCTTCAGAAAATGACAGCTTCAAATTTTCTTCAAGAGAAACTTATTAGTTTCAACTCTTTAGACAGAAGCCAGTTGCTTGACTTATCTTTAGAAAAACTAATATCGGAATCAGAGACATCTGAAGACTATATTAGAAGTCCCCAATTGAAGATACAAAAAAATCAATCCGAGCCGTATTCTGAACTATATCTCACTGAAAGATCAGTGAGATCGAAGATTGAAACCCCAGAATTGCAGGTTGCTCTCGAACTACCACCTCAGACTAAAATCGTTACCCAAAGAATACCTCAACCTTCCATGTCTACACCAGTCTCCTTCCCTAGTTCTGTGCAAGGTTCACCTTCCCCAAAATTAAGATATCCCAGTGCACCTTCTGTTCCGGGCAATACAGCATTATTACACGATTATTCCAAATTTAGTGGTAAGGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTTATCGCTTGGCTCCAAGTGCTCTAGATTCATATAAATATATTCAACCTGGTAAGCATCCTATTTTGCATTCCCCGCTGGCACTGGAGCCAAGTTCTACATTAGAAAGACCTTCTACCACCACATCAACTTCAACCATTTCTGATCCATTTGTACTCCGCCAACTTTCTTTGAAACCTATTAAACCTTCAATTTCTCAACCGTCTCAAACCACGTCACTAGGGAGAAGTCAATTATTACCATCTTCGTTACAACCAACGCCTAGCTCTTTTCTTAGGAAGTCCACACCTTCATACAGTGAGAGCTTACCTTCGATATCCTCTTCTTCTTTATTAAGATCATGTCCATGTTCTTGTGCCAAGCAATCATTTTGTCTTCCCACTCCTCCCTCTCCTCCCATCTCTCATCCTGATTCATCTTCGTTTTTAGTAACATCTCCATCTTTTGGCAGGATGAATGGTTCATTTTCCCCATCTCCACCACAACCTTCTTCTACAACAATGCTATTGTCCTCGACAAAGACATCAATTCCAGTTGTTCTTCAATCTTCTCCGTCTAATGATCGTTTAGTTTCTTCTCAGTTGCCTAAAAAGAATTTGTCAATTGTCCCTCCCCCTCCACTATCTCCTCATCCTCCTCCTCCTCCTCCATGCTCTAGCCCCAACTTGGGTACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCGCCACCTCCACCTCTGGCCCCACCCTTGCCCCCATCTTTGAGTTCATCGACTTGTGGTTCTAGTACCATGTCTTTAGGGCCACCGTCGCCACCACCTCCTCCTAGTCCTGCACCACAGGGTTCTACCATGGTAGTCAGGAACTTGAAGGTTGTACCTGGCCCTCCACCTCCCCCACCTCCTCCCTCTCCTAGATCTTCCCCAGATCCTAGTAATGTATCTTTAGCACCGCCTCCTCCTCCTCCTCCTCTTCTGCCTAGTCGTGCACCAAATGTTTCTGCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTCTGCCAATTCAGGATCCACCTCAAGTCCAGGTGTTGTAAAGTCAGCTCCACCTGCCCCACCTCCTTCAGGTCTTTCAACGACGGGACCTGCTCCACCTGCACCCCCTCCTTCCTCACAGTCTCACGCTGGCACTAATAACGGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTTTACTTGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACGTGTCTCAACCTAAAAGGTGCAATTTGAAGCCTTACCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGTCACCAAAGAATGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCGGAGTCTGGAGGTTCTGGTAGAAATTCAAATCGCCGAGCCTCAGGGCCAAAACCAGAAAAAGTTCAGCTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACATGGCGTTAGATGTGGATCAGGTTGAGAACCTAATAAAGTTTTGTCCAACAAAAGAAGAAATGGAATTACTTAAGGGGTACACTGGGGACAAGGATAACTTGGGAAAATGTGAACAATTCTTCTTAGAATTGATGAAGGTCCCACGAGTTGAGGCCAAGCTAAGAGTTTTTTCTTTCAAGATACAATTCGGGTTGCAGGTCTCTGACCTTAGATATAGTCTGAATACTGTCAATTCGGTATCTGAAGAGATCAGAAATTCGATAAAGTTGAAAAGGGTAATGCAAACTATTCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACGCGAGCCAGAAACAATAAGATGACCCTCATGCATTATCTATGTAAGGTGATCGCTGAAAAGCTACCAGAACTTATAGAATTTCCAAAGGACCTTGTGCATTTGGAAATTTCTACGAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAACGATGGGTCCGTTTCAGAAACTTTTTGCCGGACTTTAAAAGACTTCCTTTCTCACGCCGAGGCCGAAGTGAGGTCTCTCGCGTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCGCTCGCTCTTTATTTCGGCGAGGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTAATACACTGCTCAATTTCATGCGGATGTTTGTGCGAGCACATGAAGAAAACTGTAAGCAGCTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGATTGGTAACCCGAAAAACGAGTCAGGAATCTTGATGAAGACTCCAACCTAA 4134 43.76 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDTSFMVFNFREGENQSLITNILSMYDMTVMDYPRHYEGCPLLTMEMIHHFLRSCENWLSLMQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKILDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFMAGDRTSKVLFSTPKRSKLVRQYKQVDCELVKIDIHCHIQGDVVFECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASRISIELPNIEEKEGLPIEAFARVQEIFSNVEWLSPKAEAALTALQKMTASNFLQEKLISFNSLDRSQLLDLSLEKLISESETSEDYIRSPQLKIQKNQSEPYSELYLTERSVRSKIETPELQVALELPPQTKIVTQRIPQPSMSTPVSFPSSVQGSPSPKLRYPSAPSVPGNTALLHDYSKFSGKEVIHPATISSPSSYRLAPSALDSYKYIQPGKHPILHSPLALEPSSTLERPSTTTSTSTISDPFVLRQLSLKPIKPSISQPSQTTSLGRSQLLPSSLQPTPSSFLRKSTPSYSESLPSISSSSLLRSCPCSCAKQSFCLPTPPSPPISHPDSSSFLVTSPSFGRMNGSFSPSPPQPSSTTMLLSSTKTSIPVVLQSSPSNDRLVSSQLPKKNLSIVPPPPLSPHPPPPPPCSSPNLGTSVVSPTSVPPPPPPPLAPPLPPSLSSSTCGSSTMSLGPPSPPPPPSPAPQGSTMVVRNLKVVPGPPPPPPPPSPRSSPDPSNVSLAPPPPPPPLLPSRAPNVSATTHVSGPPPPPPPPSANSGSTSSPGVVKSAPPAPPPSGLSTTGPAPPAPPPSSQSHAGTNNGNIPSIPGPPSSALLAKGRGLGRLNSKNVSQPKRCNLKPYHWLKLTRAMQGSLWAESPKNDEASKAPEFDMSELESLFSAAAPNSESGGSGRNSNRRASGPKPEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDMALDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQFFLELMKVPRVEAKLRVFSFKIQFGLQVSDLRYSLNTVNSVSEEIRNSIKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVIAEKLPELIEFPKDLVHLEISTKIQLKYLAEEMQAISKGLEKVVQELANSENDGSVSETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVNTLLNFMRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKIGNPKNESGILMKTPT 1377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12844168 12853825 - CmoCh01G017110.1 Cmo01g01711 375194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01711 1377 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 572 586 - -
Cmo01g01711 1377 SMART it6_source 471 1377 IPR015425 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 738 947 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 801 815 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 826 863 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 770 787 - -
Cmo01g01711 1377 SMART PTEN_C2_2 197 337 IPR014020 -
Cmo01g01711 1377 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 602 649 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 923 937 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 565 586 - -
Cmo01g01711 1377 ProSiteProfiles Formin homology-2 (FH2) domain profile. 957 1358 IPR015425 -
Cmo01g01711 1377 Coils Coil 1333 1360 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 872 887 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 1011 1027 - -
Cmo01g01711 1377 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 1011 1033 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 740 761 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 1354 1377 - -
Cmo01g01711 1377 Pfam Formin Homology 2 Domain 961 1332 IPR015425 -
Cmo01g01711 1377 Gene3D Formin, FH2 domain 976 1368 IPR042201 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 677 711 - -
Cmo01g01711 1377 PANTHER FORMIN-J 869 1368 - -
Cmo01g01711 1377 PANTHER FORMIN-J 1 865 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 482 504 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 897 922 - -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 482 509 - -
Cmo01g01711 1377 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cmo01g01711 1377 MobiDBLite consensus disorder prediction 670 711 - -
Cmo01g01711 1377 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cmo01g01711 1377 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1033 1359 - -
Cmo01g01711 1377 Gene3D - 196 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01711 Cmo09g00417 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01711 Cmo-Chr1:12844168 Cmo10g00505 Cmo-Chr10:2257120 0 dispersed
Cmo19g00208 Cmo-Chr19:1367829 Cmo01g01711 Cmo-Chr1:12844168 9.30E-51 dispersed
Cmo01g01711 Cmo-Chr1:12844168 Cmo09g00417 Cmo-Chr9:1825147 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01711 - - csv:101214019 1805.8