Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01725 ATGCAGGAAGATAAGTCGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCGTTCGTGGAAGCAGATTTGCTACTACTCGCTTCGATTCATCCTCTGCCGATTCTTCGTCGCTTCGTCCTCATGGCGGCGTTACGCTAACCCTTAAGATTGGAGATCTACGGTTTGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGATTCTGCAGCTTAGAGAGGTTGTAACAGTCCCTGAGGATATCTTGAAGGTCAAATTAGAAGTCGAGACAGAGATTTTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAACATTCAGCAATCGCAATCTCAAGGTCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGTCGATCTGGGCAGTTACCTGCCTCTGCAGAGGAAGGATCTTGGGATGCAATTCGTGAGGATAAGGATTTATCAGGTCAATCTCAGTCGAGGTTGCATGACTCTAATAATAGGAGTCAAGCTTCTGGTAACCAAGGGGTTGGTACTGCACCTGCCCTCATCAAGGCCGACGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTGAAAGGTATACTTAATAAGTTGACTCCAGAAAAGTTCGACGTACTGAAGGGTCAATTGATTGACTCTGGAATTGTGTCCGCTGATATTTTGAAGGAGGTTATATCACTTTTATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCGATGTATGCACTTTTGTGCTCTGACCTTAATGACAAGCTTCCTCCATTCCCATCTGATGTTCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTTTTAAACATTTGCCAAGAGGCATTTGAAGGTGCTGAGCACATAAGGGCAGAAATCGGGCGGCTGACTGATCCTGAGCATGAAATGGAAAGAAGAGATAAGGAAAGAATGGTTAAGCTTCGAACTCTTGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTGACTGAAAGGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGTCCGACAATAACGTATGCCCTGCTGAGGAGAATGTTGAGGCTATTTGTCAGTTTTTTAACACAATTGGCAAGCAAATGGATGAAAGCCCAAAATCTCGGCGGGTCAATGATGTATATTTCAGCCGGTTGAAGGAACTCGCTGCAAACACTCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAATTGGGTTCCTAGGCGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAGGCTGAGAAGAATCTAGGGCTTCGTCCCGGTTCAATGGCAATGATGAGAAATGGCCGTAATGCCGAGGCACTTGGGGGACAAAGTCCTGCTGGATTTCCTGTTGCTCGTCCTGGCTTTGGAGGTATGATGCCTGGAATGCCTCCTGGAACGAGGAAAATGCCTGGTATGCCTGGACTTGATTCGGACGATTGGGAGGTGGTTCCTAGATCCCGATCGATGCCAAGGGGCGAGCGTGCCCAGACACCATTAATTGGCAAAACACCTTCTATTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGCGCCTTGCTACAGGGCAGTGCTGCATCTCCTGCACGAACAAGTCCCACGCCTGGAATCCAGCCCGTCGCTCACAATGCTAGACCAGTTCCTCCAGTTGCATCCACCATATCCTCTCCTCAGAAGCCAACAGCTCCTGCTGTAGTATCCAATTCTGCTGATCTTCACAAAAAAACCGTTTCACTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCGCTACTGTGTGTAGAGGAGCTAAAATCTCCAGCATATCACCCCGAGGTTGTGAAACAATCTCTTACCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGACCACCTGCTTCACAAGAATGTCTTCACTGCAAAGGATATCGGTACCGGGTGCCTTCTTTACGGGTCCATGATGGATGATATAGGCATCGATTATCCAAACGTGCCAAACTTTTTCGGTGATACTCTCGGGAAGTTAATATTGATCAGGGGTTTGGATTTTTCAGTCGTCAAGGAGATCCTCGAGAAGCTCGAAGATAACTATTTCCAGAAATCCATTTTTGGTAGTGTTATGAAGATCCTCAACTCGAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGTGTTGAAATCCAAGCATGTGAGAATTTACTTGCGTGA 2307 46.12 MQEDKSVISLRPGGGGGVRGSRFATTRFDSSSADSSSLRPHGGVTLTLKIGDLRFEGRERIQYTRDQILQLREVVTVPEDILKVKLEVETEIFGEDQTWARAENIQQSQSQGRYFEPDNRDWRGRSGQLPASAEEGSWDAIREDKDLSGQSQSRLHDSNNRSQASGNQGVGTAPALIKADVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDVLKGQLIDSGIVSADILKEVISLLFEKAVFEPTFCPMYALLCSDLNDKLPPFPSDVPGEKDITFKRVLLNICQEAFEGAEHIRAEIGRLTDPEHEMERRDKERMVKLRTLGNIRLIGELLKQKMVTERIVHHIVLELLGSDNNVCPAEENVEAICQFFNTIGKQMDESPKSRRVNDVYFSRLKELAANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGQSPAGFPVARPGFGGMMPGMPPGTRKMPGMPGLDSDDWEVVPRSRSMPRGERAQTPLIGKTPSINSKYLPQGSGGVITGKTSALLQGSAASPARTSPTPGIQPVAHNARPVPPVASTISSPQKPTAPAVVSNSADLHKKTVSLLEEYFSVRILDEALLCVEELKSPAYHPEVVKQSLTIALEKIPPCVDPVVKLLDHLLHKNVFTAKDIGTGCLLYGSMMDDIGIDYPNVPNFFGDTLGKLILIRGLDFSVVKEILEKLEDNYFQKSIFGSVMKILNSSPSGEGILATQSVEIQACENLLA 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12910386 12916457 - CmoCh01G017250.1 Cmo01g01725 375208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01725 768 MobiDBLite consensus disorder prediction 137 151 - -
Cmo01g01725 768 MobiDBLite consensus disorder prediction 105 171 - -
Cmo01g01725 768 Pfam MA3 domain 604 712 IPR003891 -
Cmo01g01725 768 Pfam MIF4G domain 197 422 IPR003890 GO:0003723|GO:0005515
Cmo01g01725 768 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 767 - -
Cmo01g01725 768 SMART if4_15 197 422 IPR003890 GO:0003723|GO:0005515
Cmo01g01725 768 MobiDBLite consensus disorder prediction 511 533 - -
Cmo01g01725 768 MobiDBLite consensus disorder prediction 1 23 - -
Cmo01g01725 768 Gene3D - 598 757 - -
Cmo01g01725 768 SMART ma3_7 603 715 IPR003891 -
Cmo01g01725 768 Gene3D - 188 423 - -
Cmo01g01725 768 SUPERFAMILY ARM repeat 190 425 IPR016024 -
Cmo01g01725 768 SUPERFAMILY ARM repeat 600 754 IPR016024 -
Cmo01g01725 768 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 767 IPR045208 GO:0003743
Cmo01g01725 768 MobiDBLite consensus disorder prediction 152 170 - -
Cmo01g01725 768 ProSiteProfiles MI domain profile. 602 724 IPR003891 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01725 Cmo09g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01725 Cmo-Chr1:12910386 Cmo10g00493 Cmo-Chr10:2201428 0 dispersed
Cmo01g01725 Cmo-Chr1:12910386 Cmo09g00404 Cmo-Chr9:1776429 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01725 K03260 - csv:101211356 1190.64