Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01732 ATGGCTATTCATGCTGCTGAGGAGGCTCCTGTAAGCGGCGGGGGACTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGTATAGATGGCGTGGACGGAGAAATAGTTGGTCTATTTGGTGTGTTTGACGGTCATGGGGGAGCACGAGCTGCAGAGTATGTGAAGCACAATCTTTTTAGTAATTTAATCAGCCATCCAAAGTTCATATCGGATACCAAATCTGCCATAGCTGATGCCTACAACCACACAGACACAGAATTTCTGAAGTCTGAAAATCATCAAAACAGAGATGCTGGATCAACCGCTTCCACTGCCATTCTAGTTGGTGATCGCTTACTTGTTGCAAATGTGGGTGATTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCACAAGCCTGACCAAACTGATGAGCGACGGCGAATTGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATACGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAGTTTCTTATACTTGCTAGTGATGGGCTATGGGATGTCGTCACTAACGAGGAAGCTGTTGCCATGACGAAACCAATTCCGGACCCAGAAGAGGCGGCTAAGAGGTTGATGCTAGAAGCATATCAAAGAGGTAGCGCTGATAACATTACGTGTGTCGTCGTCCGTTTCTTGGCAAATCAGGGAAGCCCCTCTCTTGCAACATCTGGCTTAAATTAA 855 46.67 MAIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENHQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKPIPDPEEAAKRLMLEAYQRGSADNITCVVVRFLANQGSPSLATSGLN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12942300 12946490 + CmoCh01G017320.1 Cmo01g01732 375215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01732 284 SUPERFAMILY PP2C-like 17 269 IPR036457 -
Cmo01g01732 284 CDD PP2Cc 22 269 IPR001932 -
Cmo01g01732 284 ProSitePatterns PPM-type phosphatase domain signature. 54 62 IPR000222 GO:0043169
Cmo01g01732 284 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 276 - -
Cmo01g01732 284 ProSiteProfiles PPM-type phosphatase domain profile. 23 269 IPR001932 -
Cmo01g01732 284 Pfam Protein phosphatase 2C 52 262 IPR001932 -
Cmo01g01732 284 PANTHER ALPHABET, ISOFORM E-RELATED 3 276 - -
Cmo01g01732 284 Gene3D - 15 273 IPR036457 -
Cmo01g01732 284 SMART PP2C_SIG_2 34 269 IPR001932 -
Cmo01g01732 284 SMART PP2C_4 13 267 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01732 Cmo09g00390 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01732 Cmo-Chr1:12942300 Cmo15g00643 Cmo-Chr15:3121936 2.42E-127 dispersed
Cmo06g00019 Cmo-Chr6:125283 Cmo01g01732 Cmo-Chr1:12942300 7.56E-47 dispersed
Cmo08g01133 Cmo-Chr8:7240122 Cmo01g01732 Cmo-Chr1:12942300 4.67E-19 dispersed
Cmo15g00018 Cmo-Chr15:135022 Cmo01g01732 Cmo-Chr1:12942300 1.61E-51 dispersed
Cmo17g00242 Cmo-Chr17:1429561 Cmo01g01732 Cmo-Chr1:12942300 1.54E-15 dispersed
Cmo17g00985 Cmo-Chr17:8536861 Cmo01g01732 Cmo-Chr1:12942300 1.08E-42 dispersed
Cmo18g01015 Cmo-Chr18:10985698 Cmo01g01732 Cmo-Chr1:12942300 1.08E-22 dispersed
Cmo01g01732 Cmo-Chr1:12942300 Cmo09g00390 Cmo-Chr9:1719359 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01732 K17506 - csv:101216117 540.036