Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01734 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCCCTTACTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATAGTCGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCATCACAATTACAATACCTTGCAAAACAGTGGGAGTATAAACAAGCAAATGCTGTACGTCTCCTTAGGGAGGAACTTGACATCCTAAGCAAGCAGAGAAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGACGCAGAGTATGGTACAGTGACACACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAAATACTTGCAGAGAAACTCCAGGAAAACGTAAAAAATATTGAAAAGCAGTCCTCGCCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAATTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACTGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCACAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATATATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAACTTCGTGAGGAGATAGCAGTACAAAAGGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTAGATCCCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACAAAACTTGACCGGGAACAACGTCATCTATTGGAAGTTATGCTGTCTTCGGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAACTACCAAATTCCGTCCAAGGGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTTATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTCTATGTGTTACCCTATCCACCCATGGGGAAAGGAGAAGAGTGCCATAAGAAATCAACGGCTGATAACTCAACAGTTTCGGTACATGGTTTGCAAGGAGGAACGTGTCTTCCAGCCCCTCAGAATGGCTTGCGAGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAACAAGAGTGAAACCATAATGAATGGAAATAGAGAAAGCAAATCTTGTTCTCCAGAAACGACGGTATGGATACGTTGTGATGTATACGACACGGGAATTGGAATACCAGAAAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGGAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGGGAGAACCATGGATCAACATTTACATTTGTATTGCCATACAAGGTTTCAACCACCACCAGCAGCAGCAGCAGCACTTCCGACGATTCCGATGAGCTCTCAGATGAAGAGTCCACAGATGAAGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGGATGATCCCAAACTCAGTTCGATATCCCAGCTCGACCAAACTCAATGGATTTGTGGACGGTGGTTCTTATCATATTCCTTCAAACAACATCACTCCACAACCACAAGAGACTGCTCTTAGAGATGTCCGTTTAGGCAATGCCACATTAACTTCGAGCGAATCACAGTATTCATTAAGTCAGATCAATTCAAATCTTGGTAAGGAGAAATCAACAAACCAACCCGACGCAAATGCTCGGTTCCAAAATGCGAACGTGAATTCCATTCAACGGTTGGAAACGAAGCAAGAAGATACATTGGAAAAGCCAAGTAGTAAACTCCAAAAAACAGATCAGGGTAAAGAGAGGTCCGATGCAAGTTCCCACTTTAGAACTACCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAATCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGGTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTGTTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCGGCTGTAAATGCTGGAATCGAGCCAACTACTCCTTGTTGGACTCCCTCATCCCGTAAAAGAATGCCCATCATTGCTATGACGGCGAATACGTTGTCAGAAAGCGCGGATGAGTGTTATGAAAACGGTATGGACTCGTTCGTATCAAAGCCAATAACATTCCAAAAGTTGAAAGAATGTCTTGAGCAATATTTACCACAACGTCCCTTGTAA 3015 41.99 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYGTVTHWKQRAMDLEKLLEASLQREQILAEKLQENVKNIEKQSSPVEELSQILKRADNFLHFVLQNAPIVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLEVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPMGKGEECHKKSTADNSTVSVHGLQGGTCLPAPQNGLRGQKHGDRNHLHCDAPGTPNKSETIMNGNRESKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTTSSSSSTSDDSDELSDEESTDEEMTEGFFQFQPHSFSSLSSSNGSTRMIPNSVRYPSSTKLNGFVDGGSYHIPSNNITPQPQETALRDVRLGNATLTSSESQYSLSQINSNLGKEKSTNQPDANARFQNANVNSIQRLETKQEDTLEKPSSKLQKTDQGKERSDASSHFRTTSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGIEGVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIEPTTPCWTPSSRKRMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12959460 12965238 - CmoCh01G017340.1 Cmo01g01734 375217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01734 1004 Gene3D PAS domain 205 335 - -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 713 732 - -
Cmo01g01734 1004 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1000 - -
Cmo01g01734 1004 SUPERFAMILY CheY-like 859 1001 IPR011006 -
Cmo01g01734 1004 Pfam Response regulator receiver domain 861 928 IPR001789 GO:0000160
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 815 851 - -
Cmo01g01734 1004 Gene3D - 435 677 IPR036890 -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 815 842 - -
Cmo01g01734 1004 Coils Coil 181 208 - -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 674 699 - -
Cmo01g01734 1004 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 ProSiteProfiles Response regulatory domain profile. 860 999 IPR001789 GO:0000160
Cmo01g01734 1004 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cmo01g01734 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 685 699 - -
Cmo01g01734 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cmo01g01734 1004 SMART REC_2 859 995 IPR001789 GO:0000160
Cmo01g01734 1004 Coils Coil 92 112 - -
Cmo01g01734 1004 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1000 - -
Cmo01g01734 1004 Coils Coil 342 362 - -
Cmo01g01734 1004 SMART HKATPase_4 482 672 IPR003594 -
Cmo01g01734 1004 Gene3D - 336 434 - -
Cmo01g01734 1004 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cmo01g01734 1004 Gene3D - 855 999 - -
Cmo01g01734 1004 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 CDD REC_hyHK_CKI1_RcsC-like 861 995 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01734 Cmo09g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01734 Cmo-Chr1:12959460 Cmo04g00017 Cmo-Chr4:90156 1.02E-52 dispersed
Cmo01g01734 Cmo-Chr1:12959460 Cmo09g00388 Cmo-Chr9:1701613 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9137 PF02518 HATPase_c 7.70E-28 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01734 - - cmos:111445954 1908.26