Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01734 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCCCTTACTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATAGTCGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCATCACAATTACAATACCTTGCAAAACAGTGGGAGTATAAACAAGCAAATGCTGTACGTCTCCTTAGGGAGGAACTTGACATCCTAAGCAAGCAGAGAAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGACGCAGAGTATGGTACAGTGACACACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAAATACTTGCAGAGAAACTCCAGGAAAACGTAAAAAATATTGAAAAGCAGTCCTCGCCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAATTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACTGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCACAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATATATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAACTTCGTGAGGAGATAGCAGTACAAAAGGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTAGATCCCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACAAAACTTGACCGGGAACAACGTCATCTATTGGAAGTTATGCTGTCTTCGGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAACTACCAAATTCCGTCCAAGGGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTTATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTCTATGTGTTACCCTATCCACCCATGGGGAAAGGAGAAGAGTGCCATAAGAAATCAACGGCTGATAACTCAACAGTTTCGGTACATGGTTTGCAAGGAGGAACGTGTCTTCCAGCCCCTCAGAATGGCTTGCGAGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAACAAGAGTGAAACCATAATGAATGGAAATAGAGAAAGCAAATCTTGTTCTCCAGAAACGACGGTATGGATACGTTGTGATGTATACGACACGGGAATTGGAATACCAGAAAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGGAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGGGAGAACCATGGATCAACATTTACATTTGTATTGCCATACAAGGTTTCAACCACCACCAGCAGCAGCAGCAGCACTTCCGACGATTCCGATGAGCTCTCAGATGAAGAGTCCACAGATGAAGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGGATGATCCCAAACTCAGTTCGATATCCCAGCTCGACCAAACTCAATGGATTTGTGGACGGTGGTTCTTATCATATTCCTTCAAACAACATCACTCCACAACCACAAGAGACTGCTCTTAGAGATGTCCGTTTAGGCAATGCCACATTAACTTCGAGCGAATCACAGTATTCATTAAGTCAGATCAATTCAAATCTTGGTAAGGAGAAATCAACAAACCAACCCGACGCAAATGCTCGGTTCCAAAATGCGAACGTGAATTCCATTCAACGGTTGGAAACGAAGCAAGAAGATACATTGGAAAAGCCAAGTAGTAAACTCCAAAAAACAGATCAGGGTAAAGAGAGGTCCGATGCAAGTTCCCACTTTAGAACTACCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAATCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGGTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTGTTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCGGCTGTAAATGCTGGAATCGAGCCAACTACTCCTTGTTGGACTCCCTCATCCCGTAAAAGAATGCCCATCATTGCTATGACGGCGAATACGTTGTCAGAAAGCGCGGATGAGTGTTATGAAAACGGTATGGACTCGTTCGTATCAAAGCCAATAACATTCCAAAAGTTGAAAGAATGTCTTGAGCAATATTTACCACAACGTCCCTTGTAA 3015 41.99 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYGTVTHWKQRAMDLEKLLEASLQREQILAEKLQENVKNIEKQSSPVEELSQILKRADNFLHFVLQNAPIVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLEVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPMGKGEECHKKSTADNSTVSVHGLQGGTCLPAPQNGLRGQKHGDRNHLHCDAPGTPNKSETIMNGNRESKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTTSSSSSTSDDSDELSDEESTDEEMTEGFFQFQPHSFSSLSSSNGSTRMIPNSVRYPSSTKLNGFVDGGSYHIPSNNITPQPQETALRDVRLGNATLTSSESQYSLSQINSNLGKEKSTNQPDANARFQNANVNSIQRLETKQEDTLEKPSSKLQKTDQGKERSDASSHFRTTSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGIEGVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIEPTTPCWTPSSRKRMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12959460 12965238 - CmoCh01G017340.1 Cmo01g01734 375217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01734 1004 Gene3D PAS domain 205 335 - -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 713 732 - -
Cmo01g01734 1004 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1000 - -
Cmo01g01734 1004 SUPERFAMILY CheY-like 859 1001 IPR011006 -
Cmo01g01734 1004 Pfam Response regulator receiver domain 861 928 IPR001789 GO:0000160
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cmo01g01734 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 815 851 - -
Cmo01g01734 1004 Gene3D - 435 677 IPR036890 -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 815 842 - -
Cmo01g01734 1004 Coils Coil 181 208 - -
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 674 699 - -
Cmo01g01734 1004 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 ProSiteProfiles Response regulatory domain profile. 860 999 IPR001789 GO:0000160
Cmo01g01734 1004 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cmo01g01734 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cmo01g01734 1004 MobiDBLite consensus disorder prediction 685 699 - -
Cmo01g01734 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cmo01g01734 1004 SMART REC_2 859 995 IPR001789 GO:0000160
Cmo01g01734 1004 Coils Coil 92 112 - -
Cmo01g01734 1004 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1000 - -
Cmo01g01734 1004 Coils Coil 342 362 - -
Cmo01g01734 1004 SMART HKATPase_4 482 672 IPR003594 -
Cmo01g01734 1004 Gene3D - 336 434 - -
Cmo01g01734 1004 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cmo01g01734 1004 Gene3D - 855 999 - -
Cmo01g01734 1004 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cmo01g01734 1004 CDD REC_hyHK_CKI1_RcsC-like 861 995 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01734 - - - cmos:111445954 1908.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01734 Cmo09g00388 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01734 Cmo-Chr1:12959460 Cmo04g00017 Cmo-Chr4:90156 1.02E-52 dispersed
Cmo01g01734 Cmo-Chr1:12959460 Cmo09g00388 Cmo-Chr9:1701613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g01290 . 31 1193 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1438.7
Cmo06g00111 . 515 1725 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1428.3
Cmo04g00017 . 53 1033 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Cmo04g02235 CST 23 1023 Histidine Kinase Gene Family AT2G01830 69.3 0.0e+00 1304.7
Cmo15g00925 CST 155 1182 Histidine Kinase Gene Family AT2G01830 67.1 0.0e+00 1268.4
Cmo11g01837 . 279 1229 Histidine Kinase Gene Family AT2G01830 53.2 2.1e-273 939.5
Cmo20g00674 . 297 1240 Histidine Kinase Gene Family AT2G01830 53.5 8.1e-273 937.6
Cmo08g00183 . 51 984 Histidine Kinase Gene Family AT2G01830 52.3 1.3e-265 913.7
Cmo02g00226 . 283 1214 Histidine Kinase Gene Family AT2G01830 51.2 8.2e-257 884.4
Cmo17g01385 . 58 980 Histidine Kinase Gene Family AT2G01830 50.7 6.9e-256 881.3
Cmo01g01734 CST 1 999 Histidine Kinase Gene Family AT5G10720 57.1 2.2e-290 995.7
Cmo09g00388 CST 1 996 Histidine Kinase Gene Family AT5G10720 56.5 4.1e-289 991.5
Cmo05g00967 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cmo12g00639 . 23 1087 Histidine Kinase Gene Family AT1G09570 69.9 0.0e+00 1566.2
Cmo19g00869 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1205.7
Cmo14g01619 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1195.6
Cmo06g01560 CST 29 1109 Histidine Kinase Gene Family AT1G09570 52.0 0.0e+00 1137.1
Cmo14g01619 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1670.6
Cmo06g01560 CST 28 1050 Histidine Kinase Gene Family AT2G18790 76.7 0.0e+00 1585.5
Cmo18g00427 . 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1226.1
Cmo13g00596 . 31 1050 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Cmo05g00967 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1086.2
Cmo19g00869 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.1 0.0e+00 1075.8
Cmo19g00869 . 12 1115 Histidine Kinase Gene Family AT5G35840 61.1 0.0e+00 1368.2
Cmo14g01619 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1147.5
Cmo05g00967 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1110.5
Cmo06g01560 CST 29 1111 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1100.5
Cmo14g01619 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.2 0.0e+00 1710.3
Cmo06g01560 CST 32 1111 Histidine Kinase Gene Family AT4G16250 73.4 0.0e+00 1619.8
Cmo18g00427 . 38 1113 Histidine Kinase Gene Family AT4G16250 57.3 0.0e+00 1256.5
Cmo13g00596 . 32 1092 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1245.3
Cmo05g00967 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1131.7
Cmo19g00869 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1107.4
Cmo18g00427 . 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.7
Cmo13g00596 . 15 1092 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1345.1
Cmo14g01619 CST 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1275.4
Cmo06g01560 CST 40 1109 Histidine Kinase Gene Family AT4G18130 56.7 0.0e+00 1231.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9137 PF02518 HATPase_c 7.70E-28 CL0025 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01734 Cmo_Chr01 FPKM 29.383703 28.993977 31.748854 30.017302 39.335491 42.117603 41.373127 29.621181 29.486389 28.712517