Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01740 ATGGAATCGGAGGATTCATTGAGATCAAGATTGGAGGAATTGCAAAAAGATTTGAGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCACTATATCTCTTCTTCAAGATTGCTATCCTACTGCTTCTCCTTCTCTACGCAAATCGTTCTTGATCTCTCGTTCATTCGAATGTTCCATTTCGTGTGAAATTGTCTCGTATTGTTATTGTTCTTGTGGAATTTGTAATTTTCGTGAAATCTTGTTGGTTTCTACTAGTACGTTCTATTCCGTAATTTGCCGAGTTGCTACAGTATTGAAGACAAGATATACGGCCCCAGGGTTTTGGTGTTCTGGTCTCAAGCTTTTTGAGGTTTCTTTGAGTCTGGTCTCTGATCCTTCTGAGAAACAACAATTACAGGCTAACATAGCTCATGCCAAGGAAATTCTGCACCAAATTGACAATCCATCTTCACCGTCACAACGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCGGAGCCACCCCAGCCCCAATGGCTGGTGCAATCGAACCTCTTGACAGCCGCTGCAGCTACGCTATTTAACGCTGAATCTTCTCAAGCTCCGGTTGACAACAACAACAATTCCGAGAATACTACTGACTTCCTTCAAACGTTCATGGATTTGGAAACGGTTAGCGGACCTCCGAAAGTTCCTCCTGCAAGTAAAGAAGTCGTTGAGAAACTTCCTGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCCATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAGCACACATTCCACCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGCCCGATCTGTCGACACGAATTGCCCACCGATGACCATAAATATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCAGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGCGGCGAATATATGTATATTTGA 1008 43.95 MESEDSLRSRLEELQKDLRKKQRFEEAVSTTISLLQDCYPTASPSLRKSFLISRSFECSISCEIVSYCYCSCGICNFREILLVSTSTFYSVICRVATVLKTRYTAPGFWCSGLKLFEVSLSLVSDPSEKQQLQANIAHAKEILHQIDNPSSPSQRYLFEGHLTVDPEPPQPQWLVQSNLLTAAAATLFNAESSQAPVDNNNNSENTTDFLQTFMDLETVSGPPKVPPASKEVVEKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12991049 12993776 + CmoCh01G017400.1 Cmo01g01740 375223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01740 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 329 - -
Cmo01g01740 335 SUPERFAMILY RING/U-box 236 302 - -
Cmo01g01740 335 Pfam Ring finger domain 254 296 IPR001841 -
Cmo01g01740 335 ProSiteProfiles Zinc finger RING-type profile. 255 296 IPR001841 -
Cmo01g01740 335 SMART ring_2 255 295 IPR001841 -
Cmo01g01740 335 PANTHER ABI3-INTERACTING PROTEIN 2-1 87 329 - -
Cmo01g01740 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 302 IPR013083 -
Cmo01g01740 335 Coils Coil 4 24 - -
Cmo01g01740 335 Coils Coil 306 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01740 Cmo-Chr1:12991049 Cmo13g00999 Cmo-Chr13:8520524 1.20E-24 dispersed
Cmo01g01740 Cmo-Chr1:12991049 Cmo15g00815 Cmo-Chr15:4056920 4.72E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01740 K16274 - zju:107420142 389.037