Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01757 ATGTCTATGAAGAGGGCGGTCGCCATGGCATTTCCTATTCAGCTTCTTATTCTGGTTTTTCTCTTCTGTGTTAGCGCCGGTGTTGTGGATTCCGATGATGGAGCTACGTTGTTGGAGATGAAGAAATCATTGAGGGATGTGGATAATGTTCTATATGATTGGACAAGCTCACCTTCTTCAGATTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGCCATCACTCTTAATCTTTCTGGTCTCAACCTGGTCGGAGAAATTTCTCCTTCGGTCGGGAAGCTCAAGGGCCTGCAAACTTTGGATTTGAGAGGGAATAGGCTTTCCGGTCAAATTCCTGATGAGATTGGTGACTGTTCTTCGTTAATTAATCTGGATTTATCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTAGTTGTGAAAAATAATAGACTGATTGGACCAATCCCTTCAACCTTGTCTCAGATTCCAAACTTGAAGGTCTTGGGATTGCGTGGCAACAATTTGGTGGGCACACTGTCTCCAGATATCTGTCAGCTCACTGGCTTATGGTATTTAAACAACAGTTTAACAGGCTGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTAGATTTGAGCTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACATTCACTGAGAAACTGTACTTGCATAGTAACAAGCTCACTGGTTCCATTCCAGCAGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAGTATTCCAGCCGAGCTAGGGAAACTAACCGATTTGTTCGACCTAAATGTTGCTCATAACAATCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCACGGAAATAAGTTGAACGGAACGATTCCGCTGTCTTTCCAGAGGCTAGAGAGTATGACTTACCTGAATCTGTCCTCAAATGATCTACAAGGTCCTATTCCAGTTGAGCTATCTCGAATTGGCAATTTGGATACGTTAGACATTTCAAATAACGAAGTTAATGGCACAATTTCTTCGTCGTTCGGAGATCTCGAACATCTCCTAAAGCTAAATCTAAGCGGGAATCGCTTAATGGGATCTATTCCAGCTGAATTTGGCAATCTAAGAAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGACACAACTTCAAAATCTGCTCTCCTTGAGACTTGAAAACAACAATCTATCCGGGGACGTGAGGTCGTTGATAAACTGCCCGAGTCTTACCGAACTAAACGTATCTAATAACAATCTAGCTGGTTACATTCCCACAAGCAACAACTTCTCTAGGTTCTCATTTGACAGCCTTGAACACTCGCACCATTTTACGAAATTTCTCTTCATTGCTTTCAACGCAGTGACGTTATCTAAAGCCGTTATCCTCGGGATCGCTCTTGGTGCTCTCGTAATTCTTCTAATGATGATCCTCCTAACCGTGTGCCGACCGAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTAATCCTTCACATGAACATGGCACTTCACGTGTACGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATAATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCTCACCAGCCCCTAAGCATGAACGCGTTTGAGACCGAGCTCGAAACCGTCGGCTCTTGTTCTACCAAGAACAAAAAACTTGACTGGGACACTCGGCTTAATATTGCACATGGAGCAGCCCAAGGACTATCATACCTACACCATGATTGTAGCCCTCGTATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAAGATTTCGAAGCCCATCTCACTGATTTCGGCATCGCCAAGAGTTTGTGCACCTCGAAGACATATACATCTACTTATATCATGGGAACGATTGGATACATCGATCCAGAGTATGCTCGAACGTCCCGACTTACTGAAAAATCTGATGTTTACAGCTTCGGCATTGTTTTACTTGAACTACTCACTGGAAGGAAAGCTGTAGACAATGAATCAAATCTCCACCAATTGATCTTATCGAAAACGTCCAACAACGCGGTAATGGAGACGGTTGATCCTGAAATAACTGCAACTTCCAAGGATCTTGGAGCTGTAAAGAAGGCGTTTCAGCTCGCTCTCCTGTGTACCAAGAGGCAGCCATCTGATAGGCCAACGATGCACGAAGTAACGCGCGTCATCGGCAGTCTTCTGCCCTCGGCAGCACCACTGAAGCCAATACCATCTGTTGCATCACTGCCCCCATCTGCAAGAGTCCCTAGCTACAAGGATGAATATGCAAAGCTAAAAACGCCGCACGTGCTGAACTGCCCGTCGATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTTGGAGAGGTTATATCACAGAACAGTGAGTAA 2685 43.76 MSMKRAVAMAFPIQLLILVFLFCVSAGVVDSDDGATLLEMKKSLRDVDNVLYDWTSSPSSDYCIWRGVTCDNATLNAITLNLSGLNLVGEISPSVGKLKGLQTLDLRGNRLSGQIPDEIGDCSSLINLDLSFNEIYGDIPFSISKLKQLEMLVVKNNRLIGPIPSTLSQIPNLKVLGLRGNNLVGTLSPDICQLTGLWYLNNSLTGCIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLDLSCNMLTGPIPSILGNLTFTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGSIPAELGKLTDLFDLNVAHNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPLSFQRLESMTYLNLSSNDLQGPIPVELSRIGNLDTLDISNNEVNGTISSSFGDLEHLLKLNLSGNRLMGSIPAEFGNLRSVMEIDISHNQLSGFIPQELTQLQNLLSLRLENNNLSGDVRSLINCPSLTELNVSNNNLAGYIPTSNNFSRFSFDSLEHSHHFTKFLFIAFNAVTLSKAVILGIALGALVILLMMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMNAFETELETVGSCSTKNKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTSNNAVMETVDPEITATSKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSAAPLKPIPSVASLPPSARVPSYKDEYAKLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13060288 13070590 - CmoCh01G017570.1 Cmo01g01757 375240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 173 246 - -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 650 881 - -
Cmo01g01757 894 Gene3D Ribonuclease Inhibitor 30 194 IPR032675 -
Cmo01g01757 894 Pfam Protein kinase domain 653 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01757 894 SMART LRR_typ_2 358 382 IPR003591 -
Cmo01g01757 894 SMART LRR_typ_2 170 194 IPR003591 -
Cmo01g01757 894 SMART LRR_typ_2 286 310 IPR003591 -
Cmo01g01757 894 SMART LRR_typ_2 454 477 IPR003591 -
Cmo01g01757 894 SMART LRR_typ_2 98 122 IPR003591 -
Cmo01g01757 894 SMART LRR_typ_2 406 429 IPR003591 -
Cmo01g01757 894 ProSitePatterns Protein kinases ATP-binding region signature. 604 627 IPR017441 GO:0005524
Cmo01g01757 894 Gene3D Ribonuclease Inhibitor 201 518 IPR032675 -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 13 176 - -
Cmo01g01757 894 Coils Coil 892 894 - -
Cmo01g01757 894 Gene3D Transferase(Phosphotransferase) domain 1 652 831 - -
Cmo01g01757 894 SUPERFAMILY L domain-like 193 505 - -
Cmo01g01757 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Cmo01g01757 894 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 242 653 - -
Cmo01g01757 894 SUPERFAMILY Protein kinase-like (PK-like) 576 826 IPR011009 -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 173 246 - -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 650 881 - -
Cmo01g01757 894 Gene3D Phosphorylase Kinase; domain 1 580 651 - -
Cmo01g01757 894 SUPERFAMILY L domain-like 32 239 - -
Cmo01g01757 894 ProSiteProfiles Protein kinase domain profile. 527 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01757 894 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 176 - -
Cmo01g01757 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 242 653 - -
Cmo01g01757 894 SMART serkin_6 598 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01757 Cmo-Chr1:13060288 Cmo02g01064 Cmo-Chr2:6488469 0 dispersed
Cmo01g01757 Cmo-Chr1:13060288 Cmo09g00366 Cmo-Chr9:1609331 2.51E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74067 PF00069 Pkinase 8.10E-29 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01757 K20718 - csv:101214398 1459.12