Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01764 ATGGGAATCTGCATATCCGCTGCATCTTCTCAGATTCGCCATGAAACTAAAGTTACGGCGATTTGTGCAGCAAACGAGCTTGCTTTTGAAGAACAGAGATCCGATTCCGTGTGTTCCAAGCAAGGCAACAAAGGGATCAATCAAGATGCTGCCTTTGTCTATCAGGAGTACGGCGAACAGGGCAGGGCTCTGTTCGGAGTGTTCGATGGGCATGGAACAAATGGTCATACTGTCAGCAACATGGCGAAGAGTAGACTGCCGCCGCTGTTGCTAAGCGCTATGTCAAAAGCTGAGACTGATTTTGTTGGGTGGAAAGAAGCTATGGTCACTGCCTTCAAGGTGATGGACAAAGAGATCAAACTTCAAGAGAATTTGGACTGTTCTTTTAGTGGAACCACCGCTGTTATCATTCTCAAACAGGGAGAAGATTTGGTGATTGCGAATTTGGGGGATTCGAGGGCTGTGATGGGGAGGGTGACGGAGAATGGCATCGAGGCCGTTCAATTAACGACTGATTTGAAGCCTGGTTTGCCGGATGAAGCTGAGCGGATAAGGAAGTGTAATGGGAGAGTGTTGGCTTTACAAGAAGAGCCGCATATACAGAGAGTGTGGCTGCCGAAGGAGGACGCGCCGGGGCTGGCCATGTCCAGAGCTTTTGGGGACTTTGCTCTTAAAGAACATGGCATTATTGCTCTTCCCGATGTCTCCTACCGCCGTCTCGCTCCCGACGACCACTTCATCATATGGGACGTGCTGAGCAACGATGAAGTAGCGTCGATCGTGTCGAAAGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGACTGAGGCTTGGAAACGCTACCCCGCTTCCAAACTCGACGACCGCACCGTCGTGTGTCACTTCTTACAAAACAAACGCCAGTGGGAAAATTGA 927 51.13 MGICISAASSQIRHETKVTAICAANELAFEEQRSDSVCSKQGNKGINQDAAFVYQEYGEQGRALFGVFDGHGTNGHTVSNMAKSRLPPLLLSAMSKAETDFVGWKEAMVTAFKVMDKEIKLQENLDCSFSGTTAVIILKQGEDLVIANLGDSRAVMGRVTENGIEAVQLTTDLKPGLPDEAERIRKCNGRVLALQEEPHIQRVWLPKEDAPGLAMSRAFGDFALKEHGIIALPDVSYRRLAPDDHFIIWDVLSNDEVASIVSKAESEEAAAKAVVEAATEAWKRYPASKLDDRTVVCHFLQNKRQWEN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13087240 13088759 - CmoCh01G017640.1 Cmo01g01764 375247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01764 308 ProSiteProfiles PPM-type phosphatase domain profile. 34 300 IPR001932 -
Cmo01g01764 308 CDD PP2Cc 36 261 IPR001932 -
Cmo01g01764 308 Gene3D - 20 303 IPR036457 -
Cmo01g01764 308 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 305 - -
Cmo01g01764 308 Pfam Protein phosphatase 2C 37 278 IPR001932 -
Cmo01g01764 308 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
Cmo01g01764 308 PANTHER ALPHABET, ISOFORM E-RELATED 1 305 - -
Cmo01g01764 308 SMART PP2C_4 24 298 IPR001932 -
Cmo01g01764 308 SUPERFAMILY PP2C-like 36 302 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01764 Cmo-Chr1:13087240 Cmo08g00081 Cmo-Chr8:420886 6.02E-90 dispersed
Cmo01g01764 Cmo-Chr1:13087240 Cmo05g00859 Cmo-Chr5:5570993 3.88E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01764 - - csv:101214070 374.015