Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01771 ATGGCAATGGAGAAAACGTCGCCGTTGCAGGGCTTAGAGGCTGAGGAATTTCAAGAACTTGAACCTCTCATTCAAAGTTACCACAAATTTGAGGCTTCTCCTAACACAACCACTTCCCTTATTACCCAACGCATCGACGCTCCTCTCCACGCCGTTTGGCCCTTCGTTCGAAGCTTCGATAATCCTCAGAAGTACAAACACTTCGTCAAAAGCTGCAATATGTCAGCTGGCGACGGCGGGGTCGGCAGTATCAGAGAGGTGACGGTGGTCTCCGGCCTGCCGGCGTCCACCAGCACGGAGAGGCTAGAGATTTTGGACGAGGAGAAGCATATTTTGAGCTTCAGGGTGGTCGGAGGAGAGCACCGGCTGAACAATTACCGATCAGTGACATCGGTGAACGAGTTCAACAAAGACGGCAAAATTTACACCGTCGTTTTGGAGTCTTACATCGTCGACATACCGGAGGGGAACACCGGCGAGGACACCAAAATGTTTGTTGACACTGTCATTAAGTTGAACCTTCAAAAGCTTGCAGGGGCTGCCATCGCCTCTCTGCATGGACATGAATAG 570 51.05 MAMEKTSPLQGLEAEEFQELEPLIQSYHKFEASPNTTTSLITQRIDAPLHAVWPFVRSFDNPQKYKHFVKSCNMSAGDGGVGSIREVTVVSGLPASTSTERLEILDEEKHILSFRVVGGEHRLNNYRSVTSVNEFNKDGKIYTVVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLAGAAIASLHGHE 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13108213 13109236 - CmoCh01G017710.1 Cmo01g01771 375254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01771 189 Pfam Polyketide cyclase / dehydrase and lipid transport 42 178 IPR019587 -
Cmo01g01771 189 SUPERFAMILY Bet v1-like 38 183 - -
Cmo01g01771 189 PANTHER ABSCISIC ACID RECEPTOR PYL2-LIKE 14 184 - -
Cmo01g01771 189 CDD PYR_PYL_RCAR_like 38 181 - -
Cmo01g01771 189 Gene3D - 1 189 IPR023393 -
Cmo01g01771 189 PANTHER - 14 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01771 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101214314 346.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01771 Cmo09g00331 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01771 Cmo-Chr1:13108213 Cmo02g01656 Cmo-Chr2:9541943 4.86E-70 dispersed
Cmo01g01771 Cmo-Chr1:13108213 Cmo09g00331 Cmo-Chr9:1434610 1.20E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g69 Blo01g01471 . Bda01g00614 . . Bpe02g00483 . Bma01g02218 . . Cma01g01741 . Car09g00280 . . . Cpe06g00236 . . . . . . . Cla05g01824 Cam05g1946 Cec05g1959 . Clacu05g1938 Cmu05g1819 . Cone4ag1655 Cone7ag1296 Cone17ag0922 Cone20ag0265 Lsi04g01433 . . . . . . . . . . . Sed13g1853 Cmo01g01771 Cmo09g00331 Cma09g00331 . Car01g01353 . . . Bhi09g03166 Tan01g4639 Cmetu07g0839 . Hepe01g1873 . . . . . . . . . . . . Cme07g00232
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012374 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 0 1 1 1 1 1 0 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01771 Cmo_Chr01 FPKM 2.175 2.183932 3.177289 3.069243 4.473913 3.595371 3.990449 3.129426 3.838274 2.981694