Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01772 ATGGTACCTGGAGAGTACTCTAAAATGATGCCGCAAGCGGTTTATGATGTTGAACTAGTCAGTTCTACGAAGAGCATAAAACATGAGTTATGGCCTCTAGATGCAATCGATCCAGTCCAAGCAAAGTTCCCATGCTGTTTGGTTTGGACCCCTCTTCCCGTTGTCTCTTGGTTGGCACCCTTCATTGGCCATGTTGGGATTTGCAGGGAGGATGGAGTCATATTGGATTTCGCAGGATCAAATTTTGTGAATACCAATGATTTTGCATTTGGCCCCGTTGCGAGATACCTTCAACTTGACAGAGAAAAATGTTGCTTCCCAACAAGCTTAGCTGCGCATAAATGTAAGCAGGGCTATCAGCATTCACAATTTGGAACAGCCATTACCTGGGACGATGGCCTACAATCAAGTAAGCGCTATCTCGAGCATAAATCCTACAACCTTTTCACATGCAACTGCCATTCCTTTGTCGCGAATTGTCTGAACCGTGCATGTTACGATGGATCGATGAGTTGGAATATGATAAATGTAGCAGCTCTTATTCTGTGGAAAGGGCATTGGGTTGATGGCATGTCAATTTTGACCGTTTACTTGTTTTCAATTGTGGCCATTATCGTGCGCTCTCGGCGCTTCTCTGGCCCCATTTTCTGCTGTGCCACTTTCTTCACTCGAATCATGTCGTCGGACGCTGGGGAAACTGTTCGAAGGGATCGGATTCTCTCCAGCAAGCTGTATTTTGACGTTCCTTCTTCAAAGGTTCCGGTGATATATTCTTCATCGTACAACATCTCATTTCTTGGAATAGAAAAGTTGCATCCATTTGATTCGAAGAAATGGGGTCGCGTATGCCAATTCCTTGTTGCCGCTGGAGTAATAAGGAAAGATCAAATCATCGAGCCTTTGGAAGCTAAAATGAACGATCTTCTTGTGGTACATACTGAATCGTACCTGAATAGTTTGAAGAACAGTTTAAATGTTGCCAAGATTATTGAGGTCCCTCCTGTTGCGTTGTTTCCTCATTGTATTGTCAAGGAGAAAGTTGAACGTCCATTTCGTAACCAGGTTGGAGGGAGTATCTTAGCTGCAAAAGTAGCAAAGGGGAGAGGATGGGCTATCAATGTAGGAGGTGGTTTTCACCATTGTTCAGCAGAACGAGGAGGGGGATTTTGTATGTATGCAGATATTACTCTGTGTATACACTACGCCTTTGTTCAGCTAAATATATCAAGTGTAATGATTATTGATCTTGATGCCCATCAAGGAAATGGCCATGAAAAGGATTTTTCCCATGATAGCCGAGTATATATTCTTGATATGTTCAATCCAGAAATATATCCATTTGATTACGAGGCTAGGCGATGCATTAATCAGAAAGTTGAAGTCGTTAGTGGGACCAGAACTAGTGAATACTTGAAGAAATTGGAAGAAGCACTTGAGGTTGCTTCCACTTCCTATGATCCAGAATTGATTGTTTACAATGCTGGGACTGATATTCTAGATGGAGATCCTCTGGGTTTGTTGAAGATTAGTGCTGATGGAATAGCTAGGAGAGATGAAAAGGTTTTCAGATTTGCCCGTGCGAGGAGAATTCCCATTGTAATGCTAACATCAGGCGGTTACATGAAATCTAGTGCTAAAGTCATTGCTGATTCAATCGAAAATCTCTCGAAGCAAAATTTAATCGATACAGGAAGCACTCCAGGCAGAATGTAG 1713 42.5 MVPGEYSKMMPQAVYDVELVSSTKSIKHELWPLDAIDPVQAKFPCCLVWTPLPVVSWLAPFIGHVGICREDGVILDFAGSNFVNTNDFAFGPVARYLQLDREKCCFPTSLAAHKCKQGYQHSQFGTAITWDDGLQSSKRYLEHKSYNLFTCNCHSFVANCLNRACYDGSMSWNMINVAALILWKGHWVDGMSILTVYLFSIVAIIVRSRRFSGPIFCCATFFTRIMSSDAGETVRRDRILSSKLYFDVPSSKVPVIYSSSYNISFLGIEKLHPFDSKKWGRVCQFLVAAGVIRKDQIIEPLEAKMNDLLVVHTESYLNSLKNSLNVAKIIEVPPVALFPHCIVKEKVERPFRNQVGGSILAAKVAKGRGWAINVGGGFHHCSAERGGGFCMYADITLCIHYAFVQLNISSVMIIDLDAHQGNGHEKDFSHDSRVYILDMFNPEIYPFDYEARRCINQKVEVVSGTRTSEYLKKLEEALEVASTSYDPELIVYNAGTDILDGDPLGLLKISADGIARRDEKVFRFARARRIPIVMLTSGGYMKSSAKVIADSIENLSKQNLIDTGSTPGRM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13111731 13119881 - CmoCh01G017720.1 Cmo01g01772 375255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01772 570 PRINTS Histone deacetylase superfamily signature 487 497 IPR000286 -
Cmo01g01772 570 PRINTS Histone deacetylase superfamily signature 410 425 IPR000286 -
Cmo01g01772 570 PRINTS Histone deacetylase superfamily signature 376 399 IPR000286 -
Cmo01g01772 570 Pfam Histone deacetylase domain 272 549 IPR023801 -
Cmo01g01772 570 Gene3D Histone deacetylase domain 251 566 IPR037138 -
Cmo01g01772 570 PANTHER HISTONE DEACETYLASE 11 227 565 - -
Cmo01g01772 570 CDD HDAC_classIV 272 555 IPR044150 GO:0004407|GO:0016575
Cmo01g01772 570 Pfam Protein of unknown function (DUF778) 52 101 IPR008496 -
Cmo01g01772 570 Pfam Protein of unknown function (DUF778) 102 187 IPR008496 -
Cmo01g01772 570 PANTHER HISTONE DEACETYLASE 11 227 565 - -
Cmo01g01772 570 SUPERFAMILY Arginase/deacetylase 250 550 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01772 K11418 HDAC11; histone deacetylase 11 [EC:3.5.1.98] - csv:101207492 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01772 Cmo-Chr1:13111731 Cmo04g00822 Cmo-Chr4:4086461 2.45E-53 dispersed
Cmo01g01772 Cmo-Chr1:13111731 Cmo09g00334 Cmo-Chr9:1439307 3.63E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g71 Blo01g01469 . Bda01g00617 . . Bpe02g00486 . . . . . . . . . . . . . . . . . . Cla05g01825 Cam05g1947 Cec05g1960 Cco05g2019 Clacu05g1939 Cmu05g1820 Cre05g1945 Cone4ag1657 . . . . . . . . . . . . . . . . Cmo01g01772 . . . . . . . Bhi09g03164 . . . Hepe01g1874 Mch11g0407 . . . . . . . . . . . Cme07g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01772 Cmo_Chr01 FPKM 0.0 0.0 10.724713 12.012272 3.406074 3.265405 3.288599 0.218708 0.0 0.0