Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01773 ATGTCGAAAATGAAGCATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAGCGATTCCCAACCCGCGACGCGACCCACTTCGACCCCATGCCCCAATAGTAATTCATCGGTGTCTCCTTCTTCTGGGTCCTCCTCCTCTGTGGCTATGCCGTCTTCCACTACAATGGAGGCCGTTGAATCGGTGGTTGATCGGACGGCTTCTGGCGATGTGGATGGTGGCTGCGTCGATTTCAATGCTTTGGAGGAGGAGTTTCAGATGCAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCATCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTACAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCGAACTCTAGCACCCGAGGAAAGATGCCACTGTTAGTGGATCTTAAAGAAATATGTGTTACAGGTGATATCGATTATGAAGTGATTTTGGTGAACCGCTTCCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGATTGCGGAGTTTCTGAACATGGCTTCATTTTAAGTGGCCTGGTTCAAAAACTTGCTGATGTAGTTGTTGCTAGAATGGGTGGTCCTGTTGGGGACGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTTTGAACACGATTATTCTACCGCTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAGTTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACACTAATTCCATCAGAGGCACCCAGCGGTCAATTTTCGAATTATGGCTTTGATAGGAGACCCGCAGATGTTATAGCAGTTCCCGAAGATACACCGGTATTAAAAAATGAAGGAGCTGAAGCTGTATTGATTTCATCTACTCAAGATGGAGTAGAAAATGTTTGCAACTTAGTATCCAAAGAAGCTTCAGATTTAGGTGTTCAATCAAAAGAAAACGGCAGAAACTTTATTGAAGAAATTCTAAATGGGAGTTCGGATTATGATTTTGAGAAGCTTTTAGAATCAGAAAGCAGTGCATTTGAAAGTTCATCGGGTGCATGTGCACAGTCGGCATCTGCGCAAAAGAAGAAAGTTAAAAAGGTATCGAAGTATGTCATTAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTACATGCTGTATTGTTAGAGAGTGGTGCATCACCTCCTGCAGATCTGTTTTCAGATATAGATTCACAGGGAAATGGTGAAAGGAAAGCGATTCACCAAATGTATCCGATCAACGGGAAAGGCATGGATGTTGGGCTTCAGTGCAACCCTTTTGTGTTGGCAAGCCAGGGACAGTCTTCTGCTGAAGCAGAGTATTTGAACAATCTTGTCCATGAAAATAAGCAGAAAGCGTCTACTGTGGGATCAACCGAAGAACAAAAACCTGAGACAAATGCGAACAATCATGGCACTTTTTGGCCTCAGAGTATGAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGGACTCTTCATCGTGAACATGTGGATGGTGTTTCGTTAACCTCTGTTGCCAATTCTCATAAAAAACAACTAGGAAGTACCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAATCGTGAGAGTCCATCAGAAAATTTGATAGAACTTGATGATAGTAACCTGCATGCTAGTGATGGCCACAGCGAGACGATCAACCCGATATTAGGCGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATAGGATCGTATGGCGAGGTTTATCGAGCAGATTGGAATGGGACTGAAGTTGCTGTGAAGAAGTTCTTAGACCAAGATTTTTCCGGTGCTGCTTTGGTCCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGACATCCTAATGTTGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCTCATTTCTCAATCCTCACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAACTCGATGAAAGGAGGCGACTGAGAATGGCTTTCGATGTGGCCAAAGGAATGAACTACTTACACACAAGTCATCCAACCATTGTTCATAGAGATCTTAAGTCCCCCAATCTCCTCGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGGTTGTCACGTGTCAAGCAGAACACGTTTCTGTCATCAAAGTCAACTGCTGGAACGCCCGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCCAATGAGAAGTGTGATGTGTATAGTTTCGGTGTGATCTTGTGGGAGTTGACGACATGTCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTAGGATTCCAGAATAGGCGCCTGGAAATCCCAGAAGATGTTGATCCAGCAGTAGCACAGATCATTTGCGATTGTTGGCAAACGGACACGCAACTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTACGACGTCTTCAACGGCTTGTTCGGAAAACAAACTCCGGGAATCTAATATCGGAGTGA 2850 44.04 MSKMKHLLRKLHIGGGLNEHQRLSDSQPATRPTSTPCPNSNSSVSPSSGSSSSVAMPSSTTMEAVESVVDRTASGDVDGGCVDFNALEEEFQMQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTGDIDYEVILVNRFLDPELQQLERQAYNIFMDCGVSEHGFILSGLVQKLADVVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKVDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPADVIAVPEDTPVLKNEGAEAVLISSTQDGVENVCNLVSKEASDLGVQSKENGRNFIEEILNGSSDYDFEKLLESESSAFESSSGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGERKAIHQMYPINGKGMDVGLQCNPFVLASQGQSSAEAEYLNNLVHENKQKASTVGSTEEQKPETNANNHGTFWPQSMNEGFVFVDVNGEAGKLVDVNGTLHREHVDGVSLTSVANSHKKQLGSTLVDEERRWLQDNRESPSENLIELDDSNLHASDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLRMAFDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDTQLRPSFSQLITRLRRLQRLVRKTNSGNLISE 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13120602 13127677 - CmoCh01G017730.1 Cmo01g01773 375256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01773 949 MobiDBLite consensus disorder prediction 13 65 - -
Cmo01g01773 949 Gene3D Phosphorylase Kinase; domain 1 672 756 - -
Cmo01g01773 949 CDD STKc_MAP3K-like 685 928 - -
Cmo01g01773 949 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 76 942 - -
Cmo01g01773 949 SMART serkin_6 679 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01773 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Cmo01g01773 949 Pfam Protein tyrosine and serine/threonine kinase 679 931 IPR001245 GO:0004672|GO:0006468
Cmo01g01773 949 MobiDBLite consensus disorder prediction 20 65 - -
Cmo01g01773 949 PANTHER SERINE-THREONINE PROTEIN KINASE 76 942 - -
Cmo01g01773 949 ProSiteProfiles Protein kinase domain profile. 679 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01773 949 Gene3D Transferase(Phosphotransferase) domain 1 758 944 - -
Cmo01g01773 949 SUPERFAMILY Protein kinase-like (PK-like) 661 929 IPR011009 -
Cmo01g01773 949 Pfam Ethylene-responsive protein kinase Le-CTR1 136 340 - -
Cmo01g01773 949 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Cmo01g01773 949 PRINTS Tyrosine kinase catalytic domain signature 753 766 IPR001245 GO:0004672|GO:0006468
Cmo01g01773 949 PRINTS Tyrosine kinase catalytic domain signature 792 810 IPR001245 GO:0004672|GO:0006468
Cmo01g01773 949 PRINTS Tyrosine kinase catalytic domain signature 839 849 IPR001245 GO:0004672|GO:0006468
Cmo01g01773 949 PRINTS Tyrosine kinase catalytic domain signature 858 880 IPR001245 GO:0004672|GO:0006468
Cmo01g01773 949 PRINTS Tyrosine kinase catalytic domain signature 902 924 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01773 Cmo-Chr1:13120602 Cmo18g00050 Cmo-Chr18:323440 1.07E-80 dispersed
Cmo02g00082 Cmo-Chr2:423661 Cmo01g01773 Cmo-Chr1:13120602 3.89E-75 dispersed
Cmo20g00235 Cmo-Chr20:1141319 Cmo01g01773 Cmo-Chr1:13120602 2.49E-77 dispersed
Cmo10g01118 Cmo-Chr10:7735507 Cmo01g01773 Cmo-Chr1:13120602 2.94E-67 transposed
Cmo11g01013 Cmo-Chr11:5497639 Cmo01g01773 Cmo-Chr1:13120602 1.10E-69 transposed
Cmo01g01773 Cmo-Chr1:13120602 Cmo09g00336 Cmo-Chr9:1444748 0 wgd
Cmo01g01773 Cmo-Chr1:13120602 Cmo09g00360 Cmo-Chr9:1554180 3.18E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74068 PF07714 PK_Tyr_Ser-Thr 5.00E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01773 K04424 - csv:101214554 1574.3