Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g01780 | ATGATGAAGAAAGGAAATTTAACGGCGGAGGAACATTCGCCGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCGTATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCTGACTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGTACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTCTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAAAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCATAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCAACGTATGTTTGAGAATGAGATAGTAAACGACAGTCTGAATTTGGGTTCTTCTTCTTCGATGTTTGGATTGCATTTGAATCATCCAACTCAGACTATGTTTTGGCGTGATTAA | 1077 | 45.22 | MMKKGNLTAEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQPIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGPGSSLNPVFGSAWEMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGGGSGGGAEEITRDLLGLRALARQPDQRMFENEIVNDSLNLGSSSSMFGLHLNHPTQTMFWRD | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13151983 | 13153591 | - | CmoCh01G017800.1 | Cmo01g01780 | 375263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g01780 | 358 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 11 | 192 | - | - | |
| Cmo01g01780 | 358 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cmo01g01780 | 358 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 11 | 192 | - | - | |
| Cmo01g01780 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 49 | 74 | IPR036236 | - | |
| Cmo01g01780 | 358 | Gene3D | Classic Zinc Finger | 32 | 98 | - | - | |
| Cmo01g01780 | 358 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
| Cmo01g01780 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 53 | 73 | IPR013087 | - | |
| Cmo01g01780 | 358 | Gene3D | Classic Zinc Finger | 120 | 187 | - | - | |
| Cmo01g01780 | 358 | SMART | c2h2final6 | 51 | 73 | IPR013087 | - | |
| Cmo01g01780 | 358 | SMART | c2h2final6 | 127 | 147 | IPR013087 | - | |
| Cmo01g01780 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 51 | 73 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01780 | Cmo-Chr1:13151983 | Cmo08g00742 | Cmo-Chr8:4706485 | 1.29E-110 | dispersed | |
| Cmo01g01780 | Cmo-Chr1:13151983 | Cmo08g00317 | Cmo-Chr8:1974557 | 8.68E-111 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9140 | None | None | None | None | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g01780 | K25870 | - | cmos:111446481 | 726.857 |