Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01783 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGACCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAGACAGCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTTGTTCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAACGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTTTGTCTAAACATTCCAAAGCTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAGACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCAACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCGCTCCGAATTCAAAGGCAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAATGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACACAATTGGGTAAGAATGGAACAAAACTAAGGTCATGA 1326 48.11 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLTSAWKAYKGAHKTASEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVLSKHSKASEPSLVKVRKNNVSTRISARPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSLRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13169419 13171523 - CmoCh01G017830.1 Cmo01g01783 375266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01783 441 MobiDBLite consensus disorder prediction 266 322 - -
Cmo01g01783 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Cmo01g01783 441 MobiDBLite consensus disorder prediction 405 441 - -
Cmo01g01783 441 MobiDBLite consensus disorder prediction 405 425 - -
Cmo01g01783 441 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Cmo01g01783 441 MobiDBLite consensus disorder prediction 351 382 - -
Cmo01g01783 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Cmo01g01783 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Cmo01g01783 441 MobiDBLite consensus disorder prediction 267 322 - -
Cmo01g01783 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Cmo01g01783 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Cmo01g01783 441 SMART iq_5 108 129 IPR000048 GO:0005515
Cmo01g01783 441 SMART iq_5 85 107 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01783 Cmo-Chr1:13169419 Cmo17g00690 Cmo-Chr17:7036672 8.72E-77 dispersed
Cmo01g01783 Cmo-Chr1:13169419 Cmo09g00343 Cmo-Chr9:1477225 1.77E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01783 - - csv:101210019 756.903