Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01783 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGACCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAGACAGCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTTGTTCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAACGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTTTGTCTAAACATTCCAAAGCTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAGACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCAACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCGCTCCGAATTCAAAGGCAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAATGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACACAATTGGGTAAGAATGGAACAAAACTAAGGTCATGA 1326 48.11 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLTSAWKAYKGAHKTASEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVLSKHSKASEPSLVKVRKNNVSTRISARPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSLRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13169419 13171523 - CmoCh01G017830.1 Cmo01g01783 375266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01783 441 MobiDBLite consensus disorder prediction 266 322 - -
Cmo01g01783 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Cmo01g01783 441 MobiDBLite consensus disorder prediction 405 441 - -
Cmo01g01783 441 MobiDBLite consensus disorder prediction 405 425 - -
Cmo01g01783 441 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Cmo01g01783 441 MobiDBLite consensus disorder prediction 351 382 - -
Cmo01g01783 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Cmo01g01783 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Cmo01g01783 441 MobiDBLite consensus disorder prediction 267 322 - -
Cmo01g01783 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Cmo01g01783 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Cmo01g01783 441 SMART iq_5 108 129 IPR000048 GO:0005515
Cmo01g01783 441 SMART iq_5 85 107 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01783 - - - csv:101210019 756.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01783 Cmo-Chr1:13169419 Cmo17g00690 Cmo-Chr17:7036672 8.72E-77 dispersed
Cmo01g01783 Cmo-Chr1:13169419 Cmo09g00343 Cmo-Chr9:1477225 1.77E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01783 Cmo_Chr01 FPKM 0.309671 0.15619 0.240993 0.0 0.277888 0.3972 0.338208 0.183236 0.217909 0.163989