Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01793 ATGGAGGATCGGGAGGAGGAAGAGAGGGCGGAAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGTGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGGTGTTGGAAAGAAAGTTAGCCTCCTCGGACGTGCCTAAGGAAGAACAGATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGACATATATGCCATGAAAAAATTGAAGAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTACTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAGGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAGAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATCCACAGGGACATTAAACCTGACAATCTTCTCCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCTTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAGTTTGGCAGAACCAATGGACATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTATACCACTGGCAAATGAACCGTAGGAAATTGGCATTTTCAACAGTTGGAACACCTGATTACATAGCTCCAGAAGTATTACTCAAAAAAGGATATGGGATGGAATGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTTGGCTATCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCAACTGAAGTTTCCAGAGGATGCTAAGTTGTCAATTGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGTGCATACCAAATTAAAGCTCATCCGTGGTTCAAAGATGTCATCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTTAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCCGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTCGATGGCACTGCGGGAGACTATGCAGCCGAACTAATAGCCAGTGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1506 43.23 MEDREEEERAEEEVQGSSLTMEKVAVAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDESLAEPMDIDDNRSSWKSPSEQLYHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNQLKFPEDAKLSIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVIWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDGTAGDYAAELIASEAEMQMLAVSGDPMLP 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13215370 13223294 + CmoCh01G017930.1 Cmo01g01793 375276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01793 501 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cmo01g01793 501 SUPERFAMILY Protein kinase-like (PK-like) 77 432 IPR011009 -
Cmo01g01793 501 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo01g01793 501 Pfam Protein kinase domain 286 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01793 501 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01793 501 Gene3D Phosphorylase Kinase; domain 1 413 423 - -
Cmo01g01793 501 Gene3D Phosphorylase Kinase; domain 1 91 176 - -
Cmo01g01793 501 CDD STKc_NDR_like 91 459 - -
Cmo01g01793 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 472 - -
Cmo01g01793 501 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01793 501 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cmo01g01793 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cmo01g01793 501 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo01g01793 501 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 472 - -
Cmo01g01793 501 Gene3D Transferase(Phosphotransferase) domain 1 293 412 - -
Cmo01g01793 501 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Cmo01g01793 501 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01793 Cmo-Chr1:13215370 Cmo11g00724 Cmo-Chr11:3495011 0 dispersed
Cmo01g01793 Cmo-Chr1:13215370 Cmo10g00764 Cmo-Chr10:3533326 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74069 PF00069 Pkinase 4.10E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01793 K08790 - csv:101212228 968.378