Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01797 ATGGATCTCGTCGACGAGGCTGACAAGTCGTTCAACGCCCCAACACGAACCTACGTCCGGGATGCCAAGGCCATGGCAGCCACTCCGGCCGACATCAAGGAGTATCCAAATTCCTACGTTTTCGTCGTCGACATGCCAGGGCTGAAGGTCGGAGACATCAAGGTTCAGGTTGAGGACGACAATGTGCTACTGATAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAAGGGGCGAAGTATGTGAGGATGGAGAGGAGAGTTGGGAAGTTAATGAGGAAATTTGTGTTGCCGGAAAATGCCAACGTTGATGCCATCTCGGCGGTTTGTCAGGATGGTGTGCTCACGGTGACCGTGCAAAAGTTGCCACCACCTGAGCCCAAGAAGCCCAAGGTGGTTGAGGTCAAGGTCAATTGA 414 53.62 MDLVDEADKSFNAPTRTYVRDAKAMAATPADIKEYPNSYVFVVDMPGLKVGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKLMRKFVLPENANVDAISAVCQDGVLTVTVQKLPPPEPKKPKVVEVKVN 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13240619 13241032 - CmoCh01G017970.1 Cmo01g01797 375280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01797 137 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 21 137 IPR002068 -
Cmo01g01797 137 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 2 136 - -
Cmo01g01797 137 SUPERFAMILY HSP20-like chaperones 8 131 IPR008978 -
Cmo01g01797 137 Gene3D - 1 136 IPR008978 -
Cmo01g01797 137 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 2 136 - -
Cmo01g01797 137 Pfam Hsp20/alpha crystallin family 31 135 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01797 K13993 HSP20; HSP20 family protein - csv:101212955 207.608
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01797 Cmo-Chr1:13240619 Cmo01g00931 Cmo-Chr1:5353002 1.09E-26 dispersed
Cmo01g01797 Cmo-Chr1:13240619 Cmo01g01799 Cmo-Chr1:13241940 1.36E-49 proximal
Cmo14g01235 Cmo-Chr14:10468467 Cmo01g01797 Cmo-Chr1:13240619 7.52E-24 transposed
Cmo01g01797 Cmo-Chr1:13240619 Cmo09g00355 Cmo-Chr9:1535666 2.56E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g125 . . Bda01g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00538 . Cmo01g01797 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01797 Cmo_Chr01 FPKM 8.777778 6.728015 15.973708 19.927742 3.487716 5.656343 8.229741 43.790581 38.698486 52.189262