Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01799 ATGGAGTTGGCCAGAATGGGGTTGGACCCAATATTCCTGAATGCCCTCCATGACCTTCTGGACTTCACCGATGAGGCAGGGCAGAGCACCCACCACGGGCCGTCACGCGCCTTCGTGAGGGACGCAAAGGCGATGGCGGCGACTCCAGCGGATGTGGTAGAATATCCAAACGCCTACCAATTCTCCATCGACATGCCTGGCCTCAAAATGGACCAAATCAAGGTCCAAATCGAGGACAACCAGTTGGTTGTGACCGGCGAGAGGAAGAGAGAGAGTGAGAAGGTTAAGGAAGGGAAATATGTGACAATGGAGAGGAGGCTGGGCAAATACTTGAAGAAATTTGTGCTGCCGGAGGCCGCCGATGTCGACAAAGTATCAGCGGCGTACCAGGACGGAGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCAGAGCCCAAAAAGGCCAAGACTATTGAGGTTCGTGTGGGACAAGATTGA 480 55.0 MELARMGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDMPGLKMDQIKVQIEDNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRVGQD 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13241940 13242419 - CmoCh01G017990.1 Cmo01g01799 375282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01799 159 MobiDBLite consensus disorder prediction 139 159 - -
Cmo01g01799 159 Gene3D - 9 155 IPR008978 -
Cmo01g01799 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Cmo01g01799 159 CDD ACD_sHsps-like 51 138 - -
Cmo01g01799 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 157 - -
Cmo01g01799 159 MobiDBLite consensus disorder prediction 141 159 - -
Cmo01g01799 159 PANTHER 18.8 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 9 157 - -
Cmo01g01799 159 SUPERFAMILY HSP20-like chaperones 33 150 IPR008978 -
Cmo01g01799 159 Pfam Hsp20/alpha crystallin family 52 154 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01799 K13993 HSP20; HSP20 family protein - csv:101213192 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01799 Cmo-Chr1:13241940 Cmo09g00355 Cmo-Chr9:1535666 2.82E-47 dispersed
Cmo14g01235 Cmo-Chr14:10468467 Cmo01g01799 Cmo-Chr1:13241940 5.46E-18 dispersed
Cmo01g01797 Cmo-Chr1:13240619 Cmo01g01799 Cmo-Chr1:13241940 1.36E-49 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1781 Cmo01g01799 . . . . . . Cpe02g00280 Bhi09g03103 Tan01g4591 Cmetu07g1652 . . Mch11g0439 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01799 Cmo_Chr01 FPKM 16.188509 17.136183 13.218663 13.926308 21.269135 19.9184 19.931463 27.243048 24.707535 24.381195