Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01806 ATGGATTTGAACGGGAATAAACCTTTGAAACCTATTCGAAGAAGCTCGTCGCAGAAGGAAAGTGAAAATGGTAGCCAAGTAGTTGTTGAAATTAGCAGAGATGAAAATGGGTACTCTGTTCCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGATGGATTCGAGTATTGGCTATGGCTACGACTCGCATCTCACTCCGACGGCGAATAAACCCCCGAAAATCCCCGGTTCAGTTGGAACCCTCACGCCTAGAAAATCCCTCAAAAGATCAATCCTATCGAAACCCAAATCCAGATTCGGGGAACAATCAAGCTACATCGATTCAGATACGTTTGAGGAGAATCGTTTGTCGTTTAGAGATCAAATCAGTGCAAATTCATCGAGACGTTCTACTCTCAACACGCCGAAGGAACATCATGAGGAAGGAGATGAAGATATTTTCAAGATAGAGAAGTTTAAGAAAGAGAAGCACAAGAAAGTGAAGGTAATAACATTGATTAAATGGGTTGGAGCTTTTTGCATCATTGGTTGCTTGGTAGCTAGCTTGACTATTAAACGTTTGAAGAATTACTTCCTTTGGGGTATAGAGATTTGGAAATGGTGTTTGCTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATCGGGTTATGAACGTGATTGTGTTCTTGATTGAGAGGAACTTTTTGCTTCAGAAAAAAGTGTTCTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGTGTCTTTGTTTGATCGGAGTAGCCATAGGGTCTTGAGATCAAAGATCAGTGGGAAGATTTTGGATGCCATTACATGGACTCTAATAACACTTCTGATAGGAGCATTTTTGTGGTTGATAAAGACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATACAGGAATCCATTTTCCATCATCATGTTCTTCAAACCCTTTTGAACCCTTCACCAATTGGCATGCCTGAAAGTACTGTCGAGTCCAACAGTGGTCGATTGAGTTTCAAGGGTAAAAAATCCAACCATAAGAAGGTGATTGACTTGGGAAAGATTCATCAGCTGAAGCGAGAGAAGGTTTCGGCATGGACGATGAAGGTTTTGGTCGATGCAGTTGCAAGTTCGGAGATGTCGATCTCACAATTACTTGACGAAAGCTACCAAGTTGCTGACGGTGAGATCACCGATGAGACGGAGGTTGCTGGATATGCTGCCTTCAAGATCTTCAACAATATTGCTGTTCCTGGAAACGATTTCATAGAGGAAGAGGATCTTCGGAGAGTTATGATCAAAGAAGAAGTTGATCTTGTGCTTCCACTCTTTGAGGTAGATGAGACAAGGAGGATTGACTGGAAATCTCTAACAAATTGGGTGTTAAAGGTATATAAAGAGAGGAAAACACTAGCACATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAATTGAACAATTTGGTAACAGTGCTTCTGATCATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTCCTATCTCAACTTGCAGTGGCTGTTTTCATGTTTGGAAACACTTGCAAGACTATCTTTGAAGCTCTAGTCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGCGCTGTCGAGGGCGTCCCGTTGATGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAAGTGTATTATCCCAACTCAGTTTTGGCAACAAAGTCGATCACGAATTACTACAGAAGTCCTGACATGAGCGACACGGTAGAATTCTCGATCGGTTTCGCAACGCCATTGGAGAGGATCGGGCTCATGAAAGACAGAATAAGGAGATATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGAAGGAGATCGAAGACGTGAACAAGATAAAGTTTGCTCTTTATTCGAACCACACGATGAATTTCCAGGATTGGACGGAGAAGAATCGTCGAAGAACCGAGCTGGTGATGGAGTTGAAGAGAATTTTCGAAGAACTGAAGATCAACTACAATCTTCTACCTCAAACAGTTCATCTCTTCCGAGCCGAGGGGCACTGA 2181 41.82 MDLNGNKPLKPIRRSSSQKESENGSQVVVEISRDENGYSVPKQNRVDSQTKEPMDSSIGYGYDSHLTPTANKPPKIPGSVGTLTPRKSLKRSILSKPKSRFGEQSSYIDSDTFEENRLSFRDQISANSSRRSTLNTPKEHHEEGDEDIFKIEKFKKEKHKKVKVITLIKWVGAFCIIGCLVASLTIKRLKNYFLWGIEIWKWCLLATVILCGMIFTHRVMNVIVFLIERNFLLQKKVFYFVHGLKKSVQVTLWLTLVLVTWVSLFDRSSHRVLRSKISGKILDAITWTLITLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLLNPSPIGMPESTVESNSGRLSFKGKKSNHKKVIDLGKIHQLKREKVSAWTMKVLVDAVASSEMSISQLLDESYQVADGEITDETEVAGYAAFKIFNNIAVPGNDFIEEEDLRRVMIKEEVDLVLPLFEVDETRRIDWKSLTNWVLKVYKERKTLAHALKDTKTAVKQLNNLVTVLLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAVFMFGNTCKTIFEALVFVFVMHPFDVGDRCAVEGVPLMVEEMNILTTVFLKLNNEKVYYPNSVLATKSITNYYRSPDMSDTVEFSIGFATPLERIGLMKDRIRRYLEKNPQHWHPNHSVVVKEIEDVNKIKFALYSNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFRAEGH 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13267027 13271028 + CmoCh01G018060.1 Cmo01g01806 375289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01806 726 PIRSF Memb_At2g17000 6 724 IPR016688 -
Cmo01g01806 726 MobiDBLite consensus disorder prediction 18 55 - -
Cmo01g01806 726 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 22 720 - -
Cmo01g01806 726 MobiDBLite consensus disorder prediction 1 84 - -
Cmo01g01806 726 Pfam Mechanosensitive ion channel 504 710 IPR006685 GO:0016020|GO:0055085
Cmo01g01806 726 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 22 720 IPR016688 -
Cmo01g01806 726 SUPERFAMILY Sm-like ribonucleoproteins 554 613 IPR010920 -
Cmo01g01806 726 Gene3D - 564 613 IPR023408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01806 Cmo-Chr1:13267027 Cmo11g00734 Cmo-Chr11:3563852 0 dispersed
Cmo01g01806 Cmo-Chr1:13267027 Cmo10g00779 Cmo-Chr10:3619191 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01806 K22048 - csv:101217197 1026.16