Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01810 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACAAGAGGGAAGAGGAACTGAAGATTGGTGAAATGAAACCCATGTGTGAGGATGTTTTTGACAACCCGGATGACTCTGATCGCATTGTCCGAAATGGGGATGATTCTGAAGGGACTGACCCGCTTGCGATTGCTGTTGATGGGCCTGACCGCCACGATGCTGATCGACTGATATTGTTTGAGGATATGGACAGAGCAATGCACGATGACGGCGATGATGGTGCTCATTGGGATGATGACGTCGGCGGCGGCGGTGGGGCTATCAATCCTCGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGTGGGGAGAGTAGTAGAGCCTCGGCTTTGGCTTTGTCTTCTACAGTGGAGACTACTATTGAGGATCGCGATCGCGATGTCCACCATAAGCGCGCTAAAGTTCTCTCCAAATTCAATGAGTACTCCTTTGCAACTCCATGGCTATTGGGTGCTGGAAATCTTACAAGAGATCACGATTTTAGTCCTGGATCATCTTCAATTATGTCTAAGGGTGATTTTTTCAGTCATGGTTCTTCATCAAACAGAGTTAACAACGACGGAGATTTTGAATCTAGTTTTGGCAATGATGATGAGATAAATGAGAATGGGGCCTGTAAATTAGAGGGATCTGAAGTAAGAATAGATCTTACGGATGATTTATTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGAGGATATGTGTGGACGGTATCCTAATGCGACAGAGGTGAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCAATGAAAGCAGTTTTTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACATTTTTCCATGCCCTGGCTGATTGCCATTTGTTGAAGAGCTTGACTGTCAACGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCACGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGTATATCTGTCAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGCAACATGGCACATGCTGGTCTTAGTTGCCCTCTTCTTCGTGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCGATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTGCTATGACCTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACTGCAATATCTAGTTGTTCTAGGTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTGTTGACTTCTGTGTCACTGGATCTTCCTCGTTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTATCATCCATTATGGTCTCTAATTGTCCTTCTCTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTACAAGATGTGGACCTCACAGATTGTGAATCTCTAACAAATTCTATTTGTGAGGTCTTTAGTGACGATGGTGGATGCCCGACGTTGAAATCACTTGTTCTAGATAACTGCGAGAGTTTGACAGCCGTTCAATTCTGTAGCAGTTCTTTAGAAAGTCTTTCCCTTGTCGGTTGTCGGGCAGTCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTATCTCTAGATGGCTGTGATCATCTTGAAAGGGCATCATTTTCCCCTGTTGGTCTGCGATCACTAAACCTGGGAATTTGTCCCAAATTGAATGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGCTGTGGTGGATTGTCTGAGGCGGCCATCAATTGCCCTCGTCTAACATCGTTGGATGCTTCCCTACTGAAAGACGAGTGCTTGTCTGCAACAACTGCCTCATGTCCACAGATTGAGTCGTTAATTCTGATGTCATGTTCTTCGGTTGGTTCAATGGGGCTTTACTCTCTTCAATGTCTTCCGAAGTTGGTTGTGCTTGATTTATCATATACATTTTTGACGAGCTTGCAGCCAGTCTTTGAGTCTTGTGCTCAACTCAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAACCTCTCTACAAGGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGATTTGTCTTACGCGATACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACAGTTAACTCATGTGAGCTTAAATGGGTGCGTGAACATGCACGATCTAAATTGGGATTGTAGCATTAGGCAGCTTTCATCGTCGGGCACCACCCTTCCTCTTGGTCCGGCCACCATTGATGATATTGAGAAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTTAATTGTGTAGGTTGTCAAAACATTAGGAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCGTTGAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGGTTATACTCTGCCCACCCGTTTGCTCTATTAACAGTTCTAGTTGATTTTTCTGTCGTTTCTGTGCTGAATAACCTTAATTGTTGCTCTCTGGAGGTTTTGAGACTCGACTGCCCGAGGCTGACCAGCCTCTTTCTCCTGTCCTGCAACATCGAGGAAGAAGCAGTCGAAGCTGCAATATCAAAATGTAGCATGCTCGAGACGTTAGATGTCCGCTCCTGTCTGAAGGTAGGCGGGGTGTCTTTCTTTCCCTCTTCGACATTGCTCGACAGTTTTGCATATTGTAACATCTCGCCAATTAGCATGGTACAACTGCGTGTCGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3213 43.85 MTIWCCLCFTVGEEDKREEELKIGEMKPMCEDVFDNPDDSDRIVRNGDDSEGTDPLAIAVDGPDRHDADRLILFEDMDRAMHDDGDDGAHWDDDVGGGGGAINPRNFSFGILHQSEGGESSRASALALSSTVETTIEDRDRDVHHKRAKVLSKFNEYSFATPWLLGAGNLTRDHDFSPGSSSIMSKGDFFSHGSSSNRVNNDGDFESSFGNDDEINENGACKLEGSEVRIDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVFSLRNLEVLTLGRGQLGDTFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAHAGLSCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIAMTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSCSRLKVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDDGGCPTLKSLVLDNCESLTAVQFCSSSLESLSLVGCRAVTSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASLLKDECLSATTASCPQIESLILMSCSSVGSMGLYSLQCLPKLVVLDLSYTFLTSLQPVFESCAQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYAILCQSAIEELLACCTQLTHVSLNGCVNMHDLNWDCSIRQLSSSGTTLPLGPATIDDIEKPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLRLYSAHPFALLTVLVDFSVVSVLNNLNCCSLEVLRLDCPRLTSLFLLSCNIEEEAVEAAISKCSMLETLDVRSCLKVGGVSFFPSSTLLDSFAYCNISPISMVQLRVACPSLKRIFSSLSPT 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13290894 13298362 + CmoCh01G018100.1 Cmo01g01810 375293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01810 1070 SUPERFAMILY L domain-like 657 1044 - -
Cmo01g01810 1070 Gene3D Ribonuclease Inhibitor 228 475 IPR032675 -
Cmo01g01810 1070 Gene3D Ribonuclease Inhibitor 636 782 IPR032675 -
Cmo01g01810 1070 Gene3D Ribonuclease Inhibitor 476 633 IPR032675 -
Cmo01g01810 1070 ProSiteProfiles F-box domain profile. 226 272 IPR001810 GO:0005515
Cmo01g01810 1070 PANTHER OS10G0396666 PROTEIN 134 1011 IPR044703 GO:0010252|GO:1905393
Cmo01g01810 1070 SUPERFAMILY L domain-like 365 706 - -
Cmo01g01810 1070 Gene3D Ribonuclease Inhibitor 815 1069 IPR032675 -
Cmo01g01810 1070 PANTHER OS10G0396666 PROTEIN 134 1011 - -
Cmo01g01810 1070 Pfam F-box-like 234 273 IPR001810 GO:0005515
Cmo01g01810 1070 SMART LRR_CC_2 986 1010 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 614 644 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 790 815 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 523 548 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 1011 1036 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 404 429 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 843 872 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 586 610 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 477 502 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 742 767 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 656 686 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 456 476 IPR006553 -
Cmo01g01810 1070 SMART LRR_CC_2 430 455 IPR006553 -
Cmo01g01810 1070 SUPERFAMILY L domain-like 272 393 - -
Cmo01g01810 1070 SUPERFAMILY F-box domain 231 279 IPR036047 GO:0005515
Cmo01g01810 1070 SMART fbox_2 232 272 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01810 - - - cmo:103493700 1688.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01810 Cmo-Chr1:13290894 Cmo17g00271 Cmo-Chr17:1620433 1.28E-07 dispersed
Cmo01g01810 Cmo-Chr1:13290894 Cmo09g00363 Cmo-Chr9:1573464 8.55E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01810 Cmo_Chr01 FPKM 9.626158 8.787702 8.918952 10.042067 15.172054 18.339874 16.896336 4.834932 3.9582 3.802163