Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01815 | ATGACCGGAATTTCCTCGCCGGTCTTCATCGGCGCCGGTGTTGACTTCTCTTCTGCCATTCACCGTTACCTTCCCTCTGCGGCTGATTCTGACGAAGTGGACGCGGCGGACTCGCCGGTTGATGGTTTTTCCTGTGACGATTTTCGGATGTTTGAGTTCAAAATTCGGAGATGCCCACGTGGTCGGTCGCATGATTGGACGGAGTGTCCGTATGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCAATATTCCGGCACGGCTTGTCCGGAATTTCGGAAAGGGAATTGCAAGAAAGGGGATTCTTGCGAACTTGCTCATGGGATTTTCGAATGTTGGCTCCATCCCGCTCGGTATCGGACTCACCCCTGTAAGGATGGATTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCACACGACAGGGCAGCTTCGGGTTCTGTCACAGCAGAGCCCGAGAACTCCGGTTTCGGGCGACTCACTCGCATTCGATTCCTATTTCGCCCATGGGTCATTTCTGACCTCACCCACTTCAATTCTATCAACGCCGCCGGTCTCCTCGCCGTCCGATTCGCCTCCTATGTCGCCGAATTGCCCCCGACTCGGCGGCGGGTCGTTTAATTCGATGAATGGGCTCGTTTTGTCCATGCGTAACCTTCAAATGGGGGAAATGAAAGCAACCCCTCAATGGGGGGTTCAAAAGGGACAAAATTTGCATTCTCCCTCCGGCTCTGGTTTCTACAGCTCACCGTCGACTCCGACCACCGGGAATTACGAATTATGGGGGAAGAATTATGAAGAAGAACCTCCAATGGAAAGAGTGGAATCTGGGAGAGACCTGAGAGCTAAAATGTATGCGAAACTCAGCAAAGACAACTCAGTGGCGCAGCCATTGACACCCGATGTCGACTGGGTCTCGGAGCTACTGATGTGGACAGGGTGA | 954 | 54.19 | MTGISSPVFIGAGVDFSSAIHRYLPSAADSDEVDAADSPVDGFSCDDFRMFEFKIRRCPRGRSHDWTECPYAHPGEKARRRDPRKYQYSGTACPEFRKGNCKKGDSCELAHGIFECWLHPARYRTHPCKDGLACRRRVCFFAHTTGQLRVLSQQSPRTPVSGDSLAFDSYFAHGSFLTSPTSILSTPPVSSPSDSPPMSPNCPRLGGGSFNSMNGLVLSMRNLQMGEMKATPQWGVQKGQNLHSPSGSGFYSSPSTPTTGNYELWGKNYEEEPPMERVESGRDLRAKMYAKLSKDNSVAQPLTPDVDWVSELLMWTG | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13306877 | 13307830 | - | CmoCh01G018150.1 | Cmo01g01815 | 375298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01815 | 317 | Gene3D | - | 82 | 156 | - | - | |
Cmo01g01815 | 317 | ProSiteProfiles | Zinc finger C3H1-type profile. | 87 | 114 | IPR000571 | GO:0046872 | |
Cmo01g01815 | 317 | PANTHER | UNKEMPT FAMILY MEMBER | 17 | 313 | IPR045234 | - | |
Cmo01g01815 | 317 | SMART | c3hfinal6 | 122 | 145 | IPR000571 | GO:0046872 | |
Cmo01g01815 | 317 | SMART | c3hfinal6 | 87 | 113 | IPR000571 | GO:0046872 | |
Cmo01g01815 | 317 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 17 | 313 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01815 | Cmo-Chr1:13306877 | Cmo10g00717 | Cmo-Chr10:3287572 | 2.72E-98 | dispersed | |
Cmo01g01815 | Cmo-Chr1:13306877 | Cmo12g00560 | Cmo-Chr12:3468989 | 1.66E-98 | wgd | |
Cmo01g01815 | Cmo-Chr1:13306877 | Cmo05g00118 | Cmo-Chr5:495566 | 1.12E-78 | wgd | |
Cmo01g01815 | Cmo-Chr1:13306877 | Cmo09g00324 | Cmo-Chr9:1409001 | 1.14E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9142 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01815 | - | - | csv:101205433 | 491.115 |