Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01815 ATGACCGGAATTTCCTCGCCGGTCTTCATCGGCGCCGGTGTTGACTTCTCTTCTGCCATTCACCGTTACCTTCCCTCTGCGGCTGATTCTGACGAAGTGGACGCGGCGGACTCGCCGGTTGATGGTTTTTCCTGTGACGATTTTCGGATGTTTGAGTTCAAAATTCGGAGATGCCCACGTGGTCGGTCGCATGATTGGACGGAGTGTCCGTATGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCAATATTCCGGCACGGCTTGTCCGGAATTTCGGAAAGGGAATTGCAAGAAAGGGGATTCTTGCGAACTTGCTCATGGGATTTTCGAATGTTGGCTCCATCCCGCTCGGTATCGGACTCACCCCTGTAAGGATGGATTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCACACGACAGGGCAGCTTCGGGTTCTGTCACAGCAGAGCCCGAGAACTCCGGTTTCGGGCGACTCACTCGCATTCGATTCCTATTTCGCCCATGGGTCATTTCTGACCTCACCCACTTCAATTCTATCAACGCCGCCGGTCTCCTCGCCGTCCGATTCGCCTCCTATGTCGCCGAATTGCCCCCGACTCGGCGGCGGGTCGTTTAATTCGATGAATGGGCTCGTTTTGTCCATGCGTAACCTTCAAATGGGGGAAATGAAAGCAACCCCTCAATGGGGGGTTCAAAAGGGACAAAATTTGCATTCTCCCTCCGGCTCTGGTTTCTACAGCTCACCGTCGACTCCGACCACCGGGAATTACGAATTATGGGGGAAGAATTATGAAGAAGAACCTCCAATGGAAAGAGTGGAATCTGGGAGAGACCTGAGAGCTAAAATGTATGCGAAACTCAGCAAAGACAACTCAGTGGCGCAGCCATTGACACCCGATGTCGACTGGGTCTCGGAGCTACTGATGTGGACAGGGTGA 954 54.19 MTGISSPVFIGAGVDFSSAIHRYLPSAADSDEVDAADSPVDGFSCDDFRMFEFKIRRCPRGRSHDWTECPYAHPGEKARRRDPRKYQYSGTACPEFRKGNCKKGDSCELAHGIFECWLHPARYRTHPCKDGLACRRRVCFFAHTTGQLRVLSQQSPRTPVSGDSLAFDSYFAHGSFLTSPTSILSTPPVSSPSDSPPMSPNCPRLGGGSFNSMNGLVLSMRNLQMGEMKATPQWGVQKGQNLHSPSGSGFYSSPSTPTTGNYELWGKNYEEEPPMERVESGRDLRAKMYAKLSKDNSVAQPLTPDVDWVSELLMWTG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13306877 13307830 - CmoCh01G018150.1 Cmo01g01815 375298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01815 317 Gene3D - 82 156 - -
Cmo01g01815 317 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Cmo01g01815 317 PANTHER UNKEMPT FAMILY MEMBER 17 313 IPR045234 -
Cmo01g01815 317 SMART c3hfinal6 122 145 IPR000571 GO:0046872
Cmo01g01815 317 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Cmo01g01815 317 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 17 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01815 Cmo-Chr1:13306877 Cmo10g00717 Cmo-Chr10:3287572 2.72E-98 dispersed
Cmo01g01815 Cmo-Chr1:13306877 Cmo12g00560 Cmo-Chr12:3468989 1.66E-98 wgd
Cmo01g01815 Cmo-Chr1:13306877 Cmo05g00118 Cmo-Chr5:495566 1.12E-78 wgd
Cmo01g01815 Cmo-Chr1:13306877 Cmo09g00324 Cmo-Chr9:1409001 1.14E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9142 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01815 - - csv:101205433 491.115