Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01817 ATGGAGGATTATAATAATCATCTAAACGAGAACTCAAATCCGAGAGGCAATTTCTTGTATGCATCAGCCAATTCTTCATCTGGTAATTATGGAAGATCAAGCAATCCGACGGCTCAGATGCCTGCTCACACGTTTCATCTTCAACAAGGAGCTGATTGTTTTCAAGCCGATCAATCGCACCCGATCGTCAAGTCAGAAGCCAGTACTTCCCACCACCAGCTCCTCAAATTCCACTACTCTTTAGGACAGCCGCCGCCGCCGCCGCCGACGACGACGACAACATGTCGGCCTGACGATGACGGCGGCGTTGATGTTGAAGCCATAAAAGCCAAAATCATGGCTCATCCACAATATTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCTCAAGTGGTGGAGCAGCTGGTGGCTGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCTGGAGATTCCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATACCGAGAGGAACTTACAAGGCCAGTTCAAGAAGCCATGGATTTCATGCGCAGGATCGAATCTCAGCTCAGTTCTCTCTGTAATGGTCCAGTTCGGATCTTCAATTCCGATGAGAAGTGCGAAGGTATCGGATCGTCAGAGGAGGAACAAGAGAATAGCGGGGGAGAAACCGAGCTACCGGAGATCGACCCGCGAGCGGAAGACAGGGAATTGAAGAACCACCTACTGAGGAAGTATAGTGGTTTCCTGAGCAGTCTAAAGCAAGAACTGTCTAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGATGCAAGACAGAAGCTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCAGAGACAGAGAAGGTAGCATTGGCTGAATCCACTGGATTGGATCAAAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTTCCAATGCAGCGCTCTACCTCGACGGTCATTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1107 48.06 MEDYNNHLNENSNPRGNFLYASANSSSGNYGRSSNPTAQMPAHTFHLQQGADCFQADQSHPIVKSEASTSHHQLLKFHYSLGQPPPPPPTTTTTCRPDDDGGVDVEAIKAKIMAHPQYSSLLEAYMECQKVGAPPQVVEQLVAARQEFEARQRSSMVSGDSTKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEGIGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGFLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNAALYLDGHYMTDGHYRLGP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13322815 13325758 + CmoCh01G018170.1 Cmo01g01817 375300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01817 368 Gene3D - 275 337 - -
Cmo01g01817 368 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Cmo01g01817 368 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Cmo01g01817 368 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 360 - -
Cmo01g01817 368 SUPERFAMILY Homeodomain-like 271 346 IPR009057 -
Cmo01g01817 368 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Cmo01g01817 368 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Cmo01g01817 368 MobiDBLite consensus disorder prediction 222 245 - -
Cmo01g01817 368 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Cmo01g01817 368 SMART ELK_2 250 271 IPR005539 GO:0003677
Cmo01g01817 368 SMART HOX_1 272 337 IPR001356 GO:0003677
Cmo01g01817 368 Pfam KNOX2 domain 162 207 IPR005541 GO:0003677|GO:0005634
Cmo01g01817 368 Pfam KNOX1 domain 107 149 IPR005540 GO:0003677|GO:0005634
Cmo01g01817 368 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Cmo01g01817 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 360 - -
Cmo01g01817 368 MobiDBLite consensus disorder prediction 7 39 - -
Cmo01g01817 368 MobiDBLite consensus disorder prediction 1 39 - -
Cmo01g01817 368 Pfam ELK domain 250 271 IPR005539 GO:0003677
Cmo01g01817 368 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01817 Cmo12g00559 CCT
Cmo01g01817 Cmo09g00320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01817 Cmo-Chr1:13322815 Cmo07g00320 Cmo-Chr7:1518538 2.92E-87 dispersed
Cmo01g01817 Cmo-Chr1:13322815 Cmo12g00559 Cmo-Chr12:3457585 3.54E-111 wgd
Cmo01g01817 Cmo-Chr1:13322815 Cmo05g00119 Cmo-Chr5:501389 8.09E-79 wgd
Cmo01g01817 Cmo-Chr1:13322815 Cmo09g00320 Cmo-Chr9:1391789 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9143 PF03791 KNOX2 1.60E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01817 - - csv:101213104 585.874