Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01823 ATGGGTGATCTCGAAAATGACGAAATGGGTTTTCGAAATTCGAGTGATGGGTTACTGAATTGTCCATCTTCGGATAGAACTTCAGTAACAATGGCGATGGGTTCGTTTTATGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAGCTTTGGAGCAGCTTCAATGGCTTCCTCACATCGAGATTTTTCAAATTCCTTTCCTATTGTTTTGGAGAATCATCATCATGGAGGAGGAAGTGGCACATCACAGACTGTTCAATATCCGACAGATTTAGAGATGGGTACGAAGTTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTCGGTTCTTTTGGTCTTGCTGATCAGATTCTTGGAGGGTGTTCTTCAAGTTACAGAAATGGAGGAACTGCCAACACTGCTCAAACATCACAAGAAACTTTACCACCACCATCTGGTGAAGAAGCTGCATTAGGTTCACCAAATGGTAAAATCAGAAAACGAGCCCTTGATTCCGCCTTCCCATTTAGCTCAAATACGAAATCTGAAGGGAAAGTGAAAAAAGATGTTTCTGGGGAAAGTTCGAGTACACAAGAAGAGAAAAATCCAGAAATGGAACAGAATTTACGAACTGGAAAACAAGCTAAAGAGAAGTCCAGTAACAGTGGAGAAGCTCCCAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAAGCTGTAATGCTTGATGAAATTATAAACTATGTTCAATCACTGCAACAACAGGTTGAGTTTTTGTCGATGAAACTTGCTACTGTCAACCCCGACATGAACATCGATCTCGAGCGGATTTTATCCAAAGATATTTTCCAGGTACGAGGCAGCAATGAAAGTGTTCTAGGATTTGATCATCCTGGGATGAGCGCAGCTCCTCCGGTCGTCCCCGCTCACCGGATGTTTCAGTTTCAGGGGATGATGTCGAATATGGCATCCACATCCACATCCACGCAGTTTCCTTCTTTACCTCAGACGATGTTGGAAAGTGATATCCAAACTCTTCTCCAAATGGGGTTCGATTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGGAGGTTGAAAGCAGAGCGCTAA 1215 43.7 MGDLENDEMGFRNSSDGLLNCPSSDRTSVTMAMGSFYGSGWDPLVSLGQSESFGAASMASSHRDFSNSFPIVLENHHHGGGSGTSQTVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLADQILGGCSSSYRNGGTANTAQTSQETLPPPSGEEAALGSPNGKIRKRALDSAFPFSSNTKSEGKVKKDVSGESSSTQEEKNPEMEQNLRTGKQAKEKSSNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDMNIDLERILSKDIFQVRGSNESVLGFDHPGMSAAPPVVPAHRMFQFQGMMSNMASTSTSTQFPSLPQTMLESDIQTLLQMGFDSGSAIDNLGPNGRLKAER 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13357555 13359989 - CmoCh01G018230.1 Cmo01g01823 375306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01823 404 MobiDBLite consensus disorder prediction 133 147 - -
Cmo01g01823 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 286 IPR011598 GO:0046983
Cmo01g01823 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 403 IPR024097 GO:0006355
Cmo01g01823 404 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 403 - -
Cmo01g01823 404 SMART finulus 242 292 IPR011598 GO:0046983
Cmo01g01823 404 MobiDBLite consensus disorder prediction 133 158 - -
Cmo01g01823 404 Pfam Helix-loop-helix DNA-binding domain 239 287 IPR011598 GO:0046983
Cmo01g01823 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 302 IPR036638 GO:0046983
Cmo01g01823 404 CDD bHLH_AtBPE_like 226 311 - -
Cmo01g01823 404 MobiDBLite consensus disorder prediction 170 226 - -
Cmo01g01823 404 MobiDBLite consensus disorder prediction 179 210 - -
Cmo01g01823 404 Gene3D - 233 306 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01823 Cmo-Chr1:13357555 Cmo04g01641 Cmo-Chr4:8388080 1.35E-56 dispersed
Cmo20g00857 Cmo-Chr20:4313087 Cmo01g01823 Cmo-Chr1:13357555 7.50E-42 dispersed
Cmo01g01823 Cmo-Chr1:13357555 Cmo09g00310 Cmo-Chr9:1336180 2.54E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9145 PF00010 HLH 4.20E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01823 - - cpep:111788194 777.704