Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01829 ATGGATAATCTATCTCAGTCTTCAGGCGGACAGTTTCGACCAAATATCCCAGCACAACCAGGCCAGACGTTCATTTCCTCATCTGCCCCACAGTTCCAGTCAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAATTCCAGCTGGTCAAGTCCAGCCACATCAGTATCCTCAATCAGTGCCACAGTTTGTGCCAAGGCCAAGCCATCGAGGCTATATCACTCCTTTGTCCCAGGGTATTCAAATGCCTTATGTTCCGACAAGGTCTCTTACTTCTGTTCCACCTCAGAGTCAGCAAAACGTGTCTGCACCAAATAATCAAATGCATGGTCTGGGTTCTCATGGACTATTTATTTCTTCACCATATACTCCAATGTCACAAATGCATGTACCTGTTGGAGTTGGTAATAGCGAACCTTTGATGTCTTCTGTAAGCCAGGCTACAAACCCAGTCTCACAGATTGAGCAAGCTAACCAGCATTCTTCAGTTTCTACCGTAAAGCTAGCTGCTAATGTTCCTGTCTTCAATCATCCATCTGATTGGCAAGAGCATGCATCAGCTGATGGAAAAAGATATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGAGCTGATGCATCAACTGTGTGGAAGGAATTTACATCTCCATATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACCATGCCAGAAGAACTGAAGTTGGCTCGCGAGCAGGCTCAGAAAGAATCTGTCCAAGGAACACAAACAGATATGGCTGTTACAACGTCTCAACCTACACCTACTGTTGGTCTTTTCCATGCTGAAACGCCGGCAATTTCTACCATTAGCTCCAGCATTTCTCCAACTGTTTCTGGGGTTGCATTGAGTCCAGTTCCAGCTGCTCTTTTTGTTTCTGGTCCTCCTGCTGTGGTCCATGTCAATGCTTCGTCAATGACTGCTTTTGAAAGCCTTGCATCTCAAGATGTAAAAAATCCTGTTGATGGAACTTCTACGGAGGACATTGAGGAAGCAAGGAAGAGAATGGCAGTTGCAGGAAAAGTTAATGAGACTGTCTTAGAGGAAAAATATGCTGACGACGAACCATTGGTATTTGCCAACAAGCTGGAGGCAAAGAGTGCATTTAAAGCGCTTCTGGAATCTGTAAATGTGCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATCGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGAAAAAAGTTGGATGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAATTCATCAAGATGTTGGATGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCCGTTGAACGTTCTAGATATCGGGAGGATCTTTTTGAAACCTGCATAGTGGAACTTGAGAAGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTACTGAATATAGGGAATTTCTCGAGTCTTGTGATTACATAAAGGTGAGTAGCAAATGGCGGAAAGTACAAGATCGATTGGAAGTTGATGATAGATGCTTATACCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGAGTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGGACGTTTGCGAAGAATTGAAAGAAAAAACCGCGATGAGTTCCGCCAACTCATGGAAGAACACATTACTGCTGGTGTTCTTACAGCTAAGACCTTTTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCTGTTGCTTCAAATATATCTGGCTCAACTCCAAAGGACTTGTTTGAGGATGTTCTGAAGGAATTAAAAACTAAGTATCACAAAGAAAAGGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGGTAGTTACCATCACTTCATCATGGACATTTGATGACCTTAAAGCTGTCATTGAAGAGGGTGCCCCTCTTGCACTTTCAGATATAAATTTTAAGCTTGTATATGAGGATTTACTAGAAAGAGCCAAAGCAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTTTGGCTGATGACTTCTCAAGACTGCTTCAGTTATTCAAGGAGATTTCAGCTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGACTACAGATTAATTGGGGAAGAGACCTTCGCGAAGGAAGTTTTTGAGGAATACGTAGTGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGGGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAATGCGAGGAAAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGGCGTGTTAAGAAGGATGAAACTGATAGCGAAAATATAGATGCAAACGAAACTCGTGTCTACAGAGAAAAGAAAAGGGAAAAAAACAAAGACAGGAAACGTCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTAATAAAGATGAGAGAGAGGAGTCTAAGAAGTCTTGCAAACGTGGCAGTGACCGAAAAAAGTCAAGGAAGCACGCATATTCACCAGAATCAGACAGTGAGAGTAGGCACAGAAGACACAAGAGAGAACATCGAGATGGTTCATGTAGAAATGACGGACATGATGAACTTGAAGAGGGGGAGCTTGGAGAGGATGGGGAAATTCAATAG 2817 42.46 MDNLSQSSGGQFRPNIPAQPGQTFISSSAPQFQSAGQNISSSNVGIPAGQVQPHQYPQSVPQFVPRPSHRGYITPLSQGIQMPYVPTRSLTSVPPQSQQNVSAPNNQMHGLGSHGLFISSPYTPMSQMHVPVGVGNSEPLMSSVSQATNPVSQIEQANQHSSVSTVKLAANVPVFNHPSDWQEHASADGKRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTSPYGRKYYYNKVTKESKWTMPEELKLAREQAQKESVQGTQTDMAVTTSQPTPTVGLFHAETPAISTISSSISPTVSGVALSPVPAALFVSGPPAVVHVNASSMTAFESLASQDVKNPVDGTSTEDIEEARKRMAVAGKVNETVLEEKYADDEPLVFANKLEAKSAFKALLESVNVQSDWTWEQAMREIINDKRYRALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFIKMLDESKELTSSTRWSKAVSMFENDERFKAVERSRYREDLFETCIVELEKKEKERAAEEHKKNITEYREFLESCDYIKVSSKWRKVQDRLEVDDRCLYLEKLDRLLIFQDYIRELEKEEEEQKKIQKGRLRRIERKNRDEFRQLMEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLKELKTKYHKEKAQIKDVMKAAKVVTITSSWTFDDLKAVIEEGAPLALSDINFKLVYEDLLERAKAKEEKEAKRRQRLADDFSRLLQLFKEISASSNWEDSKQLFEESEDYRLIGEETFAKEVFEEYVVHLQEKAKEKERKGEEEKAKKEKECEEKEKERKEKEREREKEKGRVKKDETDSENIDANETRVYREKKREKNKDRKRRKRHHSATDDGGSNKDEREESKKSCKRGSDRKKSRKHAYSPESDSESRHRRHKREHRDGSCRNDGHDELEEGELGEDGEIQ 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13376230 13387986 + CmoCh01G018290.1 Cmo01g01829 375312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01829 938 Coils Coil 713 733 - -
Cmo01g01829 938 SUPERFAMILY FF domain 444 514 IPR036517 -
Cmo01g01829 938 Pfam FF domain 387 436 IPR002713 -
Cmo01g01829 938 Pfam FF domain 454 502 IPR002713 -
Cmo01g01829 938 Pfam FF domain 596 651 IPR002713 -
Cmo01g01829 938 SUPERFAMILY FF domain 512 581 IPR036517 -
Cmo01g01829 938 CDD WW 222 249 IPR001202 GO:0005515
Cmo01g01829 938 Gene3D FF domain 441 514 IPR036517 -
Cmo01g01829 938 Gene3D FF domain 515 584 IPR036517 -
Cmo01g01829 938 Gene3D FF domain 585 667 IPR036517 -
Cmo01g01829 938 MobiDBLite consensus disorder prediction 892 926 - -
Cmo01g01829 938 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 9 932 - -
Cmo01g01829 938 MobiDBLite consensus disorder prediction 89 109 - -
Cmo01g01829 938 CDD WW 178 208 IPR001202 GO:0005515
Cmo01g01829 938 ProSiteProfiles FF domain profile. 452 507 IPR002713 -
Cmo01g01829 938 Coils Coil 568 596 - -
Cmo01g01829 938 Gene3D FF domain 707 794 IPR036517 -
Cmo01g01829 938 Coils Coil 646 673 - -
Cmo01g01829 938 SUPERFAMILY FF domain 377 438 IPR036517 -
Cmo01g01829 938 Coils Coil 773 832 - -
Cmo01g01829 938 Gene3D - 156 217 - -
Cmo01g01829 938 SUPERFAMILY WW domain 209 250 IPR036020 GO:0005515
Cmo01g01829 938 ProSiteProfiles FF domain profile. 520 574 IPR002713 -
Cmo01g01829 938 MobiDBLite consensus disorder prediction 787 938 - -
Cmo01g01829 938 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 9 932 IPR039726 GO:0045292
Cmo01g01829 938 SUPERFAMILY WW domain 180 214 IPR036020 GO:0005515
Cmo01g01829 938 SUPERFAMILY FF domain 728 789 IPR036517 -
Cmo01g01829 938 Gene3D - 218 263 - -
Cmo01g01829 938 SUPERFAMILY FF domain 589 661 IPR036517 -
Cmo01g01829 938 ProSiteProfiles FF domain profile. 385 439 IPR002713 -
Cmo01g01829 938 SMART FF_2 520 574 IPR002713 -
Cmo01g01829 938 SMART FF_2 452 507 IPR002713 -
Cmo01g01829 938 SMART FF_2 594 655 IPR002713 -
Cmo01g01829 938 SMART FF_2 385 439 IPR002713 -
Cmo01g01829 938 SMART FF_2 727 782 IPR002713 -
Cmo01g01829 938 MobiDBLite consensus disorder prediction 1 55 - -
Cmo01g01829 938 MobiDBLite consensus disorder prediction 787 848 - -
Cmo01g01829 938 ProSiteProfiles FF domain profile. 592 655 IPR002713 -
Cmo01g01829 938 ProSitePatterns WW/rsp5/WWP domain signature. 181 206 IPR001202 GO:0005515
Cmo01g01829 938 MobiDBLite consensus disorder prediction 861 884 - -
Cmo01g01829 938 Gene3D FF domain 385 440 IPR036517 -
Cmo01g01829 938 ProSiteProfiles WW/rsp5/WWP domain profile. 175 208 IPR001202 GO:0005515
Cmo01g01829 938 Coils Coil 510 530 - -
Cmo01g01829 938 ProSiteProfiles WW/rsp5/WWP domain profile. 216 249 IPR001202 GO:0005515
Cmo01g01829 938 SMART ww_5 217 249 IPR001202 GO:0005515
Cmo01g01829 938 SMART ww_5 176 208 IPR001202 GO:0005515
Cmo01g01829 938 Pfam WW domain 178 206 IPR001202 GO:0005515
Cmo01g01829 938 Pfam WW domain 222 247 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01829 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1350.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01829 Cmo09g00308 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01829 Cmo-Chr1:13376230 Cmo17g00608 Cmo-Chr17:6445084 9.21E-36 dispersed
Cmo01g01829 Cmo-Chr1:13376230 Cmo04g00465 Cmo-Chr4:2310676 0 wgd
Cmo01g01829 Cmo-Chr1:13376230 Cmo09g00308 Cmo-Chr9:1323391 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01829 Cmo_Chr01 FPKM 11.536711 11.930696 6.862922 6.230276 1.373499 0.960977 1.311862 45.980186 46.392757 46.392517