Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01831 ATGTCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAGTCAAGAGTGAGAACTTCTTCATCAACCCATGCCTCTCCAGCATGTGGGAAGCTTGATGGAGTAGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCCTTGGAACGATGCTCTTGTATTCGTATTGCCACAGCTGAAGACGACGGCGATGAGGCGAATGACGCTCCTTTGATCCCAAAAGATGTAAACCATCGACAGGACGGCGATGCAGCTGGCCGGAGGAGGGCCGGGAAAGGCAAGAAGTGTCAGCCACTTTTCTATTCTGGAGAAGAAGCGGTCCGGTTTCATAGGCCCGTTTATGAATCTGGGTTATCGCCGGCCGAAAGCCAGGAGGTTTGGTCGCAGTTTGAAGATCCGGGCGGGTCGATCTCAGGGTCACAAGGCTCGTGCCAAGCCGTCTCTTCGATCGACGGTGGGAGGAGAAGGAATCGAATGATGTCAAACCGAGAACCAGCGACGCGGCCCAGGTTGCGAAAGATGAGATATTTTGAGAGCCTGACGGTTGAAGCCGACCGGCTGAAAGTGAAGAATGAAGAGCTGAAAAGGCAGTTGAATTTGGTGTCGAAGCGTAGTTCCATGGTGCGAAGACAAAATGAGAGATTGTGGTCGGAATTTGTGGCGCTTCGAGCTCGGCTGTCCGAACTTCCCCGGCCTATTATCATATTACTAAGAAGAGAGAATTGTAAAAAAATGTTAAGCCCAAAAGAAAATAATGTATCAGAATATAGGATCTTATTAGAGTCACAGAAATCCAAGATGGGGTCGGGGCCAGAAGGGGAGGCCATGATAAAAAACAAACTCCAATCACTTTCCACTTTAACTATGGAACTCTGA 903 48.62 MSAITSTCSSFFSIRSNSMESRVRTSSSTHASPACGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDAPLIPKDVNHRQDGDAAGRRRAGKGKKCQPLFYSGEEAVRFHRPVYESGLSPAESQEVWSQFEDPGGSISGSQGSCQAVSSIDGGRRRNRMMSNREPATRPRLRKMRYFESLTVEADRLKVKNEELKRQLNLVSKRSSMVRRQNERLWSEFVALRARLSELPRPIIILLRRENCKKMLSPKENNVSEYRILLESQKSKMGSGPEGEAMIKNKLQSLSTLTMEL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13391208 13394014 - CmoCh01G018310.1 Cmo01g01831 375314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01831 300 MobiDBLite consensus disorder prediction 73 102 - -
Cmo01g01831 300 SMART brlzneu 157 223 IPR004827 GO:0003700|GO:0006355
Cmo01g01831 300 SUPERFAMILY Leucine zipper domain 163 212 IPR046347 GO:0003700|GO:0006355
Cmo01g01831 300 MobiDBLite consensus disorder prediction 141 159 - -
Cmo01g01831 300 Coils Coil 186 213 - -
Cmo01g01831 300 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 224 IPR004827 GO:0003700|GO:0006355
Cmo01g01831 300 Pfam bZIP transcription factor 163 221 IPR004827 GO:0003700|GO:0006355
Cmo01g01831 300 PANTHER PROTEIN, PUTATIVE-RELATED 4 104 - -
Cmo01g01831 300 MobiDBLite consensus disorder prediction 73 99 - -
Cmo01g01831 300 Gene3D - 162 215 - -
Cmo01g01831 300 PANTHER PROTEIN, PUTATIVE-RELATED 4 104 - -
Cmo01g01831 300 MobiDBLite consensus disorder prediction 141 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01831 - - - cmax:111480829 242.276
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01831 Cmo09g00304 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01831 Cmo-Chr1:13391208 Cmo09g00305 Cmo-Chr9:1318184 8.01E-49 dispersed
Cmo02g01160 Cmo-Chr2:6996951 Cmo01g01831 Cmo-Chr1:13391208 4.83E-12 transposed
Cmo01g01831 Cmo-Chr1:13391208 Cmo05g00130 Cmo-Chr5:570472 9.41E-22 wgd
Cmo01g01831 Cmo-Chr1:13391208 Cmo07g00641 Cmo-Chr7:2896365 1.68E-07 wgd
Cmo01g01831 Cmo-Chr1:13391208 Cmo09g00304 Cmo-Chr9:1314204 1.08E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g618 . Blo12g00994 . . . Bpe04g00147 . . . . . Cma09g00304 Car01g01382 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01464 Csa04g02497 . . . . . . . . . . Sed01g3816 Cmo01g01831 Cmo09g00304 . . . Car09g00256 . . Bhi09g03203 Tan01g4672 Cmetu09g0436 . . . . . . . . . . . . . Chy07g00206 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013825 0 2 0 0 1 1 2 1 1 1 0 0 1 1 1 2 0 2 0 1 0 1 1 1 1 1 0 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9147 PF00170 bZIP_1 2.00E-08 CL0018 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01831 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0