Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01833 ATGTCATGGTTGGCTCTCTCCATTGCTAACACCCTTCGCCTTGACGACGAAGAAGATGAGCAGCACAACGACGTCGTATCTTCTTCTTCTTCTTCTTCCACCATTCCCCGCAACCAGATGGAATCCCAATCCCAACCCCAACTCGACGACGAAGCATTATCTCGCCGCGTCAAAGAGGACTTGACTGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTGGCCACTTTCCTTGCTCCTCCTCCGCCTCCGCCGGAACCGGGGCCGACTCATCATCTCAACCTGGCGGAGGATCTGGTTGCCCCTCCCGATTGGAAGTCGTTCGAGGCGTCTAATCAGTCTGATCCATCGATCTCCGGGGACGAAGAGGACCTGACTGATCCGATTGAGGTTTTGAATATGCGTTCCAATCATGACGCCTATGCGAAATCGGGGATTTTACAGGAGGAATGCTATGAGGTGGATTGGGAAGGCGCTGTTGGGATCACTGATGAAGTGCTGACGTTTGCTACGAACATTGCAATGCACCCTGAAACTTGGATTGATTTCCCAATTGACGAGGAGGAGGACAACGGTGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACATCTTGCTCCTAGATTGGCTGCTCTCAGATTTGAGCTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTTTACTTTGTGCTCCTGCATTCAAGACTCAATAAACAGGATGCTGAGGCTTTATCTACTCCACAGGTAGCAGAAGCCAGATCAATGTGGATGCAGGAATTACAAAAGAAGACCAAGCCAGAGACTTTCTGGTGTGGAAGAGACACTTTTGAATTAAAAGACAGCTCTGATTTGTTGCAGGAAGATGATAACTCCATGGGCCTTGAAACTCATTCTGTATCTACGCTGCCTTGGACATTTACATCTGAGCCAAGCATGTCGTCTATGTCGAGCAATTGTGAGACAGAAAAATACCAAATAGAGACTTCTGAAACACAATTCATTGATAAGTCCGTCATCGTTGAAAAACCTATAATTAAAGATGAGGATAAAAACTCGACAATTGAGTCTTCTTCAAAATTCCTTGTTCAGAACTACGACGACGAGTCAGATAATGATTGGCTAGAGGAAGACTCTGGGACCATCCTCCCTCTGGGGTACGATGAAGATATTTCTTTCAGTGATCTCGAGGATGATGATATGGTTCTGCCTGCTAAGTTCAAGATTGTTTCAAAAGAATAA 1263 45.92 MSWLALSIANTLRLDDEEDEQHNDVVSSSSSSSTIPRNQMESQSQPQLDDEALSRRVKEDLTEFKQTLTRQFWGVATFLAPPPPPPEPGPTHHLNLAEDLVAPPDWKSFEASNQSDPSISGDEEDLTDPIEVLNMRSNHDAYAKSGILQEECYEVDWEGAVGITDEVLTFATNIAMHPETWIDFPIDEEEDNGDFEMSDAQKEHAFTIEHLAPRLAALRFELCPCHMSESYFWKVYFVLLHSRLNKQDAEALSTPQVAEARSMWMQELQKKTKPETFWCGRDTFELKDSSDLLQEDDNSMGLETHSVSTLPWTFTSEPSMSSMSSNCETEKYQIETSETQFIDKSVIVEKPIIKDEDKNSTIESSSKFLVQNYDDESDNDWLEEDSGTILPLGYDEDISFSDLEDDDMVLPAKFKIVSKE 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13398249 13402557 - CmoCh01G018330.1 Cmo01g01833 375316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01833 420 ProSiteProfiles BSD domain profile. 199 244 IPR005607 -
Cmo01g01833 420 Pfam BSD domain 192 248 IPR005607 -
Cmo01g01833 420 MobiDBLite consensus disorder prediction 15 51 - -
Cmo01g01833 420 MobiDBLite consensus disorder prediction 25 50 - -
Cmo01g01833 420 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 420 - -
Cmo01g01833 420 SMART wurzfinal6 192 244 IPR005607 -
Cmo01g01833 420 SUPERFAMILY BSD domain-like 162 249 IPR035925 -
Cmo01g01833 420 Gene3D BSD domain 159 255 IPR035925 -
Cmo01g01833 420 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01833 - - - csv:101202841 606.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01833 Cmo09g00301 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01833 Cmo-Chr1:13398249 Cmo11g00518 Cmo-Chr11:2515374 3.19E-28 dispersed
Cmo18g01110 Cmo-Chr18:11509452 Cmo01g01833 Cmo-Chr1:13398249 4.94E-07 dispersed
Cmo01g01833 Cmo-Chr1:13398249 Cmo03g00944 Cmo-Chr3:7118883 6.62E-73 wgd
Cmo01g01833 Cmo-Chr1:13398249 Cmo07g00644 Cmo-Chr7:2908326 7.67E-65 wgd
Cmo01g01833 Cmo-Chr1:13398249 Cmo09g00301 Cmo-Chr9:1307239 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01833 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0