Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01834 ATGCCGATGTACCAGCCTTCTTCCGGTCGGAGGAGAGAGGCCGATTCGGAGATGGGTTTGGGTGGTGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGGTTAATCTGCGACGGCGGAGGGGCTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCTCAAATGGTTTTCTCTTGGCCATTTCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACCCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTGGCAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGACAAGTTGTTGCCTCGAATTCTTCGGCAAAGAAAACCGTGGAGGACAATGGCGTTCTTGGTTCGATTTTGTCTTTGTTAGGTCCTTTCACATCCCATGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGAAGAAACCTTGTTCAACCTGCGAAGATTTCATTAATGGTGGATATGTTGAATGAGGGATCCACTGAGACTAAAATCAACTGCACCAGATTGATTGAAACTTTGCTGGATGGTGATGATTGTGGGGCAGACACTGTCTCGAGTTTTAGTCTCTTAGTTGGATTGCTGAGATTAATCAAAGAGAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAGATTGCTAAAAGCTCTGTGCTGCCAAGAACCAGTGAGGAATTCAGTAGTGAGCATTGGGGCAATCCCACAATTGATTGAAATTCTCCCAAATTTCGACCCGGAATGTTTGGAGCTAGCTCTTCATGTATTAGACTCGCTTTCGTCCCTCTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTGAAGTTGTTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCCGCGGAGCTTCTGAAGCTGTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1362 47.14 MPMYQPSSGRRREADSEMGLGGGGGGQVLDVETAVKDGILGGGGLICDGGGAEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGVLGSILSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADTVSSFSLLVGLLRLIKEKKHPNGVLAGLRLLKALCCQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13404018 13405379 - CmoCh01G018340.1 Cmo01g01834 375317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01834 453 SUPERFAMILY RING/U-box 63 139 - -
Cmo01g01834 453 Gene3D - 148 443 IPR011989 -
Cmo01g01834 453 MobiDBLite consensus disorder prediction 1 26 - -
Cmo01g01834 453 CDD RING-Ubox_PUB 73 115 IPR045210 -
Cmo01g01834 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 147 IPR013083 -
Cmo01g01834 453 SUPERFAMILY ARM repeat 144 436 IPR016024 -
Cmo01g01834 453 ProSiteProfiles U-box domain profile. 68 142 IPR003613 GO:0004842|GO:0016567
Cmo01g01834 453 PANTHER WDSAM1 PROTEIN 42 452 IPR045185 GO:0061630
Cmo01g01834 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 452 - -
Cmo01g01834 453 Pfam U-box domain 69 139 IPR003613 GO:0004842|GO:0016567
Cmo01g01834 453 SMART Ubox_2 72 135 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01834 Cmo12g00545 CCT
Cmo01g01834 Cmo05g00134 CCT
Cmo01g01834 Cmo09g00300 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01834 Cmo-Chr1:13404018 Cmo04g00519 Cmo-Chr4:2579230 5.11E-44 dispersed
Cmo01g01834 Cmo-Chr1:13404018 Cmo12g00545 Cmo-Chr12:3336364 0 wgd
Cmo01g01834 Cmo-Chr1:13404018 Cmo05g00134 Cmo-Chr5:584134 0 wgd
Cmo01g01834 Cmo-Chr1:13404018 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01834 - - csv:101223113 790.03