Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01835 ATGGCCACTCTTGGTGGTTTCAGATCTATCCTTGTGCTCTCCGCTGCCGCTGCAGGCTCATTCTGGAGTGTGAAGTATCTGCCAGGATTTTCAGGGCCTCTTCCGTTTGAACTCGAAACTGGATATGTCGGTGTGGGGGATTCGGAGGAAGTTCAGGTGTTTTATTACTTTGTGAAGTCCCAAGGAAATCCTCAAACCGATCCTCTAATGACATGGCTCATCGGAGGTCCCGGTTGCTCTGCTCTCTCTGGATTCGCCGTGGAAATCGGTCCAGTAAATTTCAAGATAGAGCCATACAATGGAAGCACACCCCAACTGATCTTGAATCCCCATTCATGGACCAAGGTTGTAACAATTATTCACCTTTTTATTTCTTTTGCAATGACACTAACTTGCAATAGTGATGGTGATATCTGCCAGAAAGCCAGTATATTATTTATAGATATGCCTGTGGGCACTGGATTTTCATATGCTCGAACTCCACAAGGCTTGAAGAAAGGAGATCTAGTACAAGTTCAACAAAATCATCAATTTTTGCGAAAGTGGCTGACTGATCACCCAGAGTTCATTCCTAATCCATTTTACGTCGGTGGGGACTCGTATTCTGGTATCATCATTCCACCTCTTACTCAAGCAATTTCAGAAGATTGCACTATTTCTAATTTTTGTTTACAAAAAACTAATGTCATAGGAAATAAACATCTCTTCCCAGCTATAAACCTTCAGGGATACATAGAAGGAAATCCTTTTAGTGTACGCAGAACAGTTAATAATTATAGGGTTCATTATGCTCATAAGATGTCCTTCATCTCTGATGAACTATATGAGTCATTGAAAACTAGTTGCAAAGGAGAATTTGAGAGTATCGATCCAACTAATTTGGAGTGCATCAAACATGTTTCTACATATAAAAAGTGTGTGAGTAGAATCAGTTTAGCATGTATTATGTGTCCTTATTGTACCGATGCTTCTCGAGCGCCAGAAAATACGTTTGGTGGGCAGAGATCCCTCTATGATACATCCCAAAATCTGTTTCTGGCTCCTAGAGTGTTACCTCCTCTTTCTCTTGACTGTGATACTTTTCCTTTTTCCAGTCTCCTTAGTTGGTTATTCTTTGCTCTCAAAGACAAGGAAGATCCTATGATCTTGAATTGTGTTCGTGAGTATAAATACTACCTTAGTTATTATTGGGCCAACGACGATCAAGTTCGGAAAGCACTTCATATACGCGAGGGAACGGTTGAAGAATGGTTTAGATGCGAAAGTAAAAAAGATTATCAATTTGATATTACGAATGTTCTTCCTTATCACGTGAATCTTAGCTCCAAAGATTATCGATCTTTGATTTTTAGTGGGGATCATGATATGATGGTGCCGATTCTAGACACTGAAGCATGGATCAAGTCTCTAAATTATTCCATTGTCGATGAGTGGAGACCTTGGTTTGACGATGAAGATCAAGTACTTGGGTACACGAGAACTTTTGCAAACAACATGACATTTGCCACGATAAAAGTGCTCTCCGCCGCCGCAGGCTCATCCTGGAGTGTGAAGTATCTGCCAGGATTTTCAGGGCCTCTTCCATTTGAACTCGAAACTGGATACGTGGGTGTGGGAGATTCGGAGGAAGTTCAGGTGTTCTATTACTTTGTGAAGTCCCAAGGAAATCCCCGAACCGATCCTCTAATGACATGGTACATCGGCGGTCCAGGTTGCTCTGCACTCTGTGGCTTTGCCTTGGAAATTGGCCCTCTAAACTTCAAGATAGAGCCATACAATGGAAGCAAAGCGAATATACTATTTATAGATACACCGGTGGGCACTGGATTTTCATACGCTCAAACTCGACGAGGTTCGAAGAAAGGAGATGTACTACAAGTTGAACAAAATCATCAATTTTTGCGGAAGTGGCTGGCTGATCATCCAGAATTCATTCGTAACCCATTTTATGTTGGTGGTGGCTCGTATTCTGGTATGATTGTTCCATCTCTTACTCAAGCAATCTCAGAAGGTAATAGCCATGGCTTCCCAATTATAAACCTTCAGGGATACATAGAGGGCAATCCTTTCAGTGTGCATAAAACAAATGATAATTATAAGATTCCTTATGCTCATAGGATGTCCTTCATCTCTGATGAACTATACGAGTCATTGAAAAGCAGCTGCAAAGGAGAATATCATAACGTTGATCCAACTAATTGCGTGAGTAGAATCAACACGGGGAATATTTTGAAGCTTCATTGTGAGGATGCTACTAGAGCGACGGAAGCTGCTACGTTTAATGATGCGAGGAGATCCCTCTACAATGCTTCTGAACAACTATTTCTTTCTCCCAGAGTGTTACCTTCGATTTCTCTCGAGTGTGATGAGTATGCGTTTTATCTCAGTTATTATTGGGCTAATAACGATCGAGTTCGGAAAGCTCTCCATGTACGTGAGGGAACGGTCGGAGAATGGTTTAGATGTCAAAGTAAAAAAGATTACCAGTATGATTTCACAAGTATGGTTCCTTATCATATGAATCTTAGTTCTAAGGGCTACAGGTCTTTGATTTTTAGCGGGGATCATGATATGGAGGTGCCGATTTTAGACACTGAAGCCTGGATCAAATCTCTAAATTATTCACTTACTGATGAATGGAGGCCTTGGTTTAACGAGGAGGATCAAATTCTTGGGTACACGAGGACTTATGCAAACAACATGACATTTGTATCCATAAAAGGCGGAGGACACACACCGCAAACCATGCAGCACCAAAGTGGCATAATGTTTAGCAGATGGATAGCGGGAGATCCTTTATAA 2802 41.36 MATLGGFRSILVLSAAAAGSFWSVKYLPGFSGPLPFELETGYVGVGDSEEVQVFYYFVKSQGNPQTDPLMTWLIGGPGCSALSGFAVEIGPVNFKIEPYNGSTPQLILNPHSWTKVVTIIHLFISFAMTLTCNSDGDICQKASILFIDMPVGTGFSYARTPQGLKKGDLVQVQQNHQFLRKWLTDHPEFIPNPFYVGGDSYSGIIIPPLTQAISEDCTISNFCLQKTNVIGNKHLFPAINLQGYIEGNPFSVRRTVNNYRVHYAHKMSFISDELYESLKTSCKGEFESIDPTNLECIKHVSTYKKCVSRISLACIMCPYCTDASRAPENTFGGQRSLYDTSQNLFLAPRVLPPLSLDCDTFPFSSLLSWLFFALKDKEDPMILNCVREYKYYLSYYWANDDQVRKALHIREGTVEEWFRCESKKDYQFDITNVLPYHVNLSSKDYRSLIFSGDHDMMVPILDTEAWIKSLNYSIVDEWRPWFDDEDQVLGYTRTFANNMTFATIKVLSAAAGSSWSVKYLPGFSGPLPFELETGYVGVGDSEEVQVFYYFVKSQGNPRTDPLMTWYIGGPGCSALCGFALEIGPLNFKIEPYNGSKANILFIDTPVGTGFSYAQTRRGSKKGDVLQVEQNHQFLRKWLADHPEFIRNPFYVGGGSYSGMIVPSLTQAISEGNSHGFPIINLQGYIEGNPFSVHKTNDNYKIPYAHRMSFISDELYESLKSSCKGEYHNVDPTNCVSRINTGNILKLHCEDATRATEAATFNDARRSLYNASEQLFLSPRVLPSISLECDEYAFYLSYYWANNDRVRKALHVREGTVGEWFRCQSKKDYQYDFTSMVPYHMNLSSKGYRSLIFSGDHDMEVPILDTEAWIKSLNYSLTDEWRPWFNEEDQILGYTRTYANNMTFVSIKGGGHTPQTMQHQSGIMFSRWIAGDPL 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13409454 13416440 + CmoCh01G018350.1 Cmo01g01835 375318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01835 933 Gene3D alpha/beta hydrolase 512 933 IPR029058 -
Cmo01g01835 933 Gene3D alpha/beta hydrolase 22 331 IPR029058 -
Cmo01g01835 933 PRINTS Carboxypeptidase C serine protease (S10) family signature 901 914 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 PRINTS Carboxypeptidase C serine protease (S10) family signature 182 207 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 510 930 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 SUPERFAMILY alpha/beta-Hydrolases 517 930 IPR029058 -
Cmo01g01835 933 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 13 506 - -
Cmo01g01835 933 Pfam Serine carboxypeptidase 521 930 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 Pfam Serine carboxypeptidase 140 505 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 Pfam Serine carboxypeptidase 28 122 IPR001563 GO:0004185|GO:0006508
Cmo01g01835 933 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 510 930 - -
Cmo01g01835 933 SUPERFAMILY alpha/beta-Hydrolases 23 505 IPR029058 -
Cmo01g01835 933 Gene3D - 384 511 - -
Cmo01g01835 933 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 506 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01835 Cmo09g00292 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01835 Cmo-Chr1:13409454 Cmo09g00298 Cmo-Chr9:1297449 1.82E-180 dispersed
Cmo09g00295 Cmo-Chr9:1292971 Cmo01g01835 Cmo-Chr1:13409454 1.36E-06 dispersed
Cmo11g00952 Cmo-Chr11:5004598 Cmo01g01835 Cmo-Chr1:13409454 3.54E-79 transposed
Cmo17g01297 Cmo-Chr17:10189663 Cmo01g01835 Cmo-Chr1:13409454 8.78E-48 transposed
Cmo01g01835 Cmo-Chr1:13409454 Cmo09g00292 Cmo-Chr9:1287608 2.60E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01835 K16296 - sly:101252581 816.609