Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01844 ATGGAAAGTTATTTGAATGAGAATTTCGGGGACGTTAAGCCGAAGAACTCATCGGAAGAAGCGCTTCAGAGATGGAGGCGGCTTTGCTGGTTGGTGAAGAATCGTAGAAGAAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCTGATGCTATTAGACGCTCCATTCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCAGCGCTTCAGTTCATCAATGGGTTGGATTTGTATCCTGATTACGTTGTGCCTGAAGAGGTCAGACAGGCAGGTTTCGAAATTTGTGCAGATGAAGCAGGCTCCATTGTTGACGGCCGTGATGTGAAGAAGCTGAAAATTCATGGGGGTGCAGAGGGTATTGCAACTAAGCTTGCTACATCAACGGAGACGGGCATCTGTACTACAGACCATTTGATAAAGAAAAGACAAGACATTTATGGAATTAACAAATTCACCGAAAGCCCATCTCGAGGATTTTTGCTCTTTCTTTGGGAAGCTCTCCAGGATACAACTCTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGCGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCGAGTATCTTACTTGTTGTATTTGTCACTGCTACCAGTGACTATAGACAATCGCTTCAGTTCAAGGATTTGGACAAGGAAAAGAAGAAAATTGCGGTTCAGGTTACCCGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTTGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACAGGTGAGAGCGAACCAGTTAACGTAAGTTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAGGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTAGGCATGAGAACCCAATGGGGAAAACTGATGGCCACTCTAAGTGAAGGAGGAGATGACGAGACTCCTTTGCAGGTAAAGCTAAATGGGGTGGCAACAATTATTGGTAAAATAGGCCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCACTCGCAAGCTACGAGAAGGGTCTTACTTCAGCTGGTCCGGAGATGAAGCAATGGAAGTTTTGGAATTTTTTGCTGTTGCCGTAACTATTGTTGTGGTTGCTGTGCCCGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCTATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTAGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGTAGTGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCCTGCATCTGCACTAAGGTCAAGGAAGTTGGCAATTCTATTAAGTGTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTTGGTATTTTACTGCAATCGATATTTAACAACACCGGTGGAGAAATCGTCAAGAACATAGATGGCGAGAATGAAATACTTGGGACGCCCACCGAATCTGCTCTTCTGGAATTCGGCCTTCTACTTGGTGGGGATTTTCAGAAAGAACGCCAAAAGTCAAAGATCGCGAGAGTCGATCCCTTCAATTCTGTGAAGAAACGAATGGGTGTTGTTTTGGAGCTCCCAGCCGGTGGCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGCGACAAATTTCTTGACTCGAACGGTGAGGCAGTTCCTCTCAATGAAGTGTCCATCAACTTTTTGAAGGAAACTATCGAAGAATTTGCGGGAGAAGCTCTTCGAACATTGTGCTTGGCTTACATGGACATTGAAGGTGAGTATCAGTCTGAAAGTCCGGTTCCCACGAGTGGCTACACGTGCATAGGAATTGTTGGTATTAAGGATCCCGTTCGTCCGGGTGTCAAGGAGTCTGTTGCAATTTGCAAGGCCGCCGGTATTACCGTACGGATGGTTACGGGAGATAACATCACCACCGCAAAAGCAATAGCCAGGGAATGTGGAATCTTGACTGACGATGGCATAGCAATTGAAGGTCCTGAATTCCGTGAGAAGGAGGAAGAGTGGAGTGAAATAATACCAAAAATTCAGGTCATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTTGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATGTTGGATTAGCTATGGGCATTGCTGGGACTGAGGTGGCAAAAGAGAGTGCTGATGTAATAATTCTCGATGACAACTTCTCTACAATTGCTACTGTTGCCAAATGGGGACGTTCAGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTAACTGTGAATGTGGTTGCCCTCATCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAATATGATAATGGATACACTAGGAGCACTTGCATTGGCAACTGAACCTCCTACTGATGACTTGATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATCAGCAACGTGATGTGGAGAAATATCTTGGGGCAGTCAATATATCAGTTTGTAATAGTTTGGTTTCTCCAGACAAGAGGGCAGGCTCTTTTTCATCTTGATGGCCCAGACTCTGAATTGATACTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAGAAGATAAATGTGCTTGAAGGAATATTGAAGAACTATGTCTTTGTGGCAGTTCTCGCTTGCACTGTACTTTTCCAGATCATAATCATCCAATTCCTGGGGACATTTGCAAACACCTATCCTCTAAACTCCCAGCAATGGTTTGTCACCGTGTTGTTTGGATTTCTTGGCATGCCAGTTGCAGCAGCGTTGAAGATGATTCCGGTAGGATCACACTGA 3060 44.54 MESYLNENFGDVKPKNSSEEALQRWRRLCWLVKNRRRRFRFTANLSKRFEADAIRRSIQEKFRVAVLVSQAALQFINGLDLYPDYVVPEEVRQAGFEICADEAGSIVDGRDVKKLKIHGGAEGIATKLATSTETGICTTDHLIKKRQDIYGINKFTESPSRGFLLFLWEALQDTTLMILAFCAVVSLLVGIAMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVSCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFTRKLREGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICTKVKEVGNSIKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNIDGENEILGTPTESALLEFGLLLGGDFQKERQKSKIARVDPFNSVKKRMGVVLELPAGGFRAHSKGASEIVLASCDKFLDSNGEAVPLNEVSINFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPVPTSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKEEEWSEIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADVGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSIYQFVIVWFLQTRGQALFHLDGPDSELILNTLIFNAFVFCQVFNEISSRDMEKINVLEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPVAAALKMIPVGSH 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13443728 13450252 + CmoCh01G018440.1 Cmo01g01844 375327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01844 1019 SUPERFAMILY HAD-like 452 860 IPR036412 -
Cmo01g01844 1019 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cmo01g01844 1019 Gene3D - 142 337 - -
Cmo01g01844 1019 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Cmo01g01844 1019 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo01g01844 1019 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1017 - -
Cmo01g01844 1019 Gene3D - 17 77 - -
Cmo01g01844 1019 Gene3D - 464 660 IPR023299 GO:0000166
Cmo01g01844 1019 SFLD C1.7: P-type atpase like 436 807 - -
Cmo01g01844 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 377 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 836 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01844 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cmo01g01844 1019 Pfam E1-E2 ATPase 237 432 - -
Cmo01g01844 1019 Pfam haloacid dehalogenase-like hydrolase 652 769 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Cmo01g01844 1019 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cmo01g01844 1019 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Cmo01g01844 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1015 IPR023298 -
Cmo01g01844 1019 PANTHER CATION TRANSPORTING ATPASE 3 1017 - -
Cmo01g01844 1019 SFLD p-type atpase 436 807 IPR044492 -
Cmo01g01844 1019 SUPERFAMILY Calcium ATPase, transduction domain A 239 334 IPR008250 -
Cmo01g01844 1019 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
Cmo01g01844 1019 Pfam Cation transport ATPase (P-type) 516 593 - -
Cmo01g01844 1019 CDD P-type_ATPase_Ca_PMCA-like 145 888 - -
Cmo01g01844 1019 Gene3D - 169 1014 - -
Cmo01g01844 1019 Gene3D - 451 800 IPR023214 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01844 Cmo09g00282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01844 Cmo-Chr1:13443728 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo12g01110 Cmo-Chr12:10123236 Cmo01g01844 Cmo-Chr1:13443728 4.70E-17 dispersed
Cmo14g00551 Cmo-Chr14:2801078 Cmo01g01844 Cmo-Chr1:13443728 5.42E-14 transposed
Cmo01g01844 Cmo-Chr1:13443728 Cmo03g00953 Cmo-Chr3:7164857 0 wgd
Cmo01g01844 Cmo-Chr1:13443728 Cmo07g00657 Cmo-Chr7:2953435 0 wgd
Cmo01g01844 Cmo-Chr1:13443728 Cmo09g00282 Cmo-Chr9:1251997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01844 K01537 - csv:101221694 1870.13