Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01850 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACTCCATCGCCGGCGCTGCACTACGACGACCCGAGTCACAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACCAAGCGTCCGCGGGGATTCGACAACCCTCCAACCGAGGAGGAGTATTTAGCGTTATGTCTTATCATGCTTGCTCGAGGCGGTGCCACCGCCTCTGACCCTGACCACCGACTTGCCTATGAAATTCCGATTCCGGCTCAGCCCATATCCGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAGGCTTTGGGTGGACATAAAGCGAGTCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCCACCATAACCACTTCCGCCACCGCTACCACCGCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGCCATAAGTCTTTTCCCACCGGTCAGGCCTTGGGTGGCCACAAGCGTTGCCACTACGACGGCGGAATTGGCAACAACAACAACAACAACCACAACCAAACACACAGTCACAACACCAACAGCAACAACCACGCCTTGACATCTTCGGAAGGAGTTGGGTCGACCCACACACAGAGCCACAGCCACCGGGACTTCGACCTCAACCTCCCCGCCTTGCCGGAGCTATCTCCGGGATTCTTCAACTCTTCCGGCGACGAGGAGGTCCAAAGCCCATTACCCCTGAAGAAGCCTCGAATCTTAACAATTCCCAAAATCGAAATCACTCAGACATAA 774 53.75 MALEALNSPTTPSPALHYDDPSHNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATASDPDHRLAYEIPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDHSTSSTITTSATATTAVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGNNNNNNHNQTHSHNTNSNNHALTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFNSSGDEEVQSPLPLKKPRILTIPKIEITQT 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13483058 13483831 + CmoCh01G018500.1 Cmo01g01850 375333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01850 257 MobiDBLite consensus disorder prediction 171 211 - -
Cmo01g01850 257 Pfam C2H2-type zinc finger 90 114 - -
Cmo01g01850 257 Pfam C2H2-type zinc finger 143 167 - -
Cmo01g01850 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Cmo01g01850 257 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Cmo01g01850 257 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Cmo01g01850 257 MobiDBLite consensus disorder prediction 120 139 - -
Cmo01g01850 257 Gene3D Classic Zinc Finger 88 165 - -
Cmo01g01850 257 MobiDBLite consensus disorder prediction 1 18 - -
Cmo01g01850 257 SMART c2h2final6 90 112 IPR013087 -
Cmo01g01850 257 SMART c2h2final6 143 165 IPR013087 -
Cmo01g01850 257 SUPERFAMILY beta-beta-alpha zinc fingers 90 165 IPR036236 -
Cmo01g01850 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Cmo01g01850 257 PANTHER ZINC FINGER PROTEIN ZAT10 1 249 - -
Cmo01g01850 257 MobiDBLite consensus disorder prediction 108 140 - -
Cmo01g01850 257 MobiDBLite consensus disorder prediction 171 203 - -
Cmo01g01850 257 MobiDBLite consensus disorder prediction 1 44 - -
Cmo01g01850 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 249 IPR044653 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01850 Cmo-Chr1:13483058 Cmo19g00570 Cmo-Chr19:6524730 1.62E-43 dispersed
Cmo01g01850 Cmo-Chr1:13483058 Cmo11g01415 Cmo-Chr11:9953685 3.18E-46 wgd
Cmo01g01850 Cmo-Chr1:13483058 Cmo12g00533 Cmo-Chr12:3253802 4.04E-78 wgd
Cmo01g01850 Cmo-Chr1:13483058 Cmo05g00148 Cmo-Chr5:651838 8.98E-71 wgd
Cmo01g01850 Cmo-Chr1:13483058 Cmo09g00276 Cmo-Chr9:1216833 8.79E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9149 PF13912 zf-C2H2_6 1.60E-12 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01850 - - csv:101221218 416.001