Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01851 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAATCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGACGTACGGTCAACCCGGTGAGTGGGGCTGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTGGAAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCTATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACGAGCTTTGGTAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA 621 52.17 MSCNGCRVLRKGCSEACVLRSSLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPTAETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHLLENRRSLDSEESVMTSFGSADNSDGDRRKERKLLNLFI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13487541 13488687 + CmoCh01G018510.1 Cmo01g01851 375334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01851 206 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Cmo01g01851 206 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cmo01g01851 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 206 - -
Cmo01g01851 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01851 Cmo09g00275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01851 Cmo-Chr1:13487541 Cmo14g00825 Cmo-Chr14:4272280 1.53E-48 dispersed
Cmo01g01851 Cmo-Chr1:13487541 Cmo03g00962 Cmo-Chr3:7221792 1.54E-60 wgd
Cmo01g01851 Cmo-Chr1:13487541 Cmo07g00669 Cmo-Chr7:3018288 4.88E-63 wgd
Cmo01g01851 Cmo-Chr1:13487541 Cmo09g00275 Cmo-Chr9:1210913 4.26E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9150 PF03195 LOB 2.70E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01851 - - cmos:111445767 414.846