Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01859 ATGGAATTAAGCGTTGTTCTCATTATGGCTATCCACAAGTTGAGGCAAGAACACACGTCCAGTTTAGGGCATTCTGAAGTCGATTTGTCGGAGATCACGACGCTCTGCCAGGCGGAAAATGTGGATGAAATCCTCGTTGAGGAAATCAAAGTGCTTGCTCGTAAGCGGCACTGCGGCAGTGCATTTCCTCTGAAGCGCGGCGGACATTTCTCGCGTTTACTCTTCCCTGCTTCCTCCGGAAAGCTCCGAACATTTAAGAGCGACGCTTCTCTCCGAACGAACGCCGACTGGTTCTGCCTTGAATATTTGGTCGAAAATCGTGTTATCGGATCGGGTCACTCGCGACGTGAGGATGGCACCGCCAGCGTCGTCTTCTTTCAATCTTCTTCCCGAAGAAAATACACAATCACTGAAAATTTCATCCACATTTTCCCATGGAGAGACCGATCCCTAGAAACATCCTCGATTGTTCCCGACGGTGAAAACCGCAGTTCAGGAATCCGGCGAACCATCTGCGTTGCCGGCCCCCCTTTTCAGATCCCAGGTCGACTCTTAACTATGGCGGATAAGGAGAATATATTTCGACTCACTCGGGGTTCTAAGAAGAGGTCCGCCGAGGCTGCTACCCCCCACGATCGCTCTGCCAACAAGAGGAGAGTCGTTCTCGGAGAGCTTCCTATTTTACAGAATGCTACTTCTTCTTCCGTCGATCGGACTTCCAGGTCCAGACCCAGCAGGCAGAGACGGAGACTCAAATCGAGGGATACAGCGGAGACAAGTGCGGCCGCTCAAATTAATACGCTTCCGGATGCTGATGTCAAGCTATCGGATGAGGGCAATTCCGAAGACCCGCAAATGTGCACGCTTTTCGCCTCTGATATTTACGAGTACCTTCGCGCCATGGAGACTGATCCACGAAGAAGACCTTTACCAGATTACATCGGGAGGGTACAAAAGGATATAAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAAAAGAATACAAGCTTGTTTCAGACACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAACGCAATCAGCAGGCAAAAACTTCAATTGCTGGGGGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCGCATGTTGAAGAATTTGTTTATATAACAGACAATACCTACAAGAGAGAAGAGGTGGTTGAGATGGAGGCAGATATATTGAAATCACTGGAATTTGAACTTGGGAGTCCCACAATAAAGACATTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTACGAATTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGTCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTACAAATTTGTGTCTATCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1683 45.51 MELSVVLIMAIHKLRQEHTSSLGHSEVDLSEITTLCQAENVDEILVEEIKVLARKRHCGSAFPLKRGGHFSRLLFPASSGKLRTFKSDASLRTNADWFCLEYLVENRVIGSGHSRREDGTASVVFFQSSSRRKYTITENFIHIFPWRDRSLETSSIVPDGENRSSGIRRTICVAGPPFQIPGRLLTMADKENIFRLTRGSKKRSAEAATPHDRSANKRRVVLGELPILQNATSSSVDRTSRSRPSRQRRRLKSRDTAETSAAAQINTLPDADVKLSDEGNSEDPQMCTLFASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAKEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYKREEVVEMEADILKSLEFELGSPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKYKFVSIMPSPPEIPIPYFEDVRI 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13520996 13525502 + CmoCh01G018590.1 Cmo01g01859 375342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01859 560 CDD CYCLIN 424 515 IPR013763 -
Cmo01g01859 560 Pfam Cyclin, N-terminal domain 293 421 IPR006671 -
Cmo01g01859 560 SMART cyclin_7 331 415 IPR013763 -
Cmo01g01859 560 SMART cyclin_7 428 516 IPR013763 -
Cmo01g01859 560 SUPERFAMILY Cyclin-like 424 549 IPR036915 -
Cmo01g01859 560 ProSitePatterns Cyclins signature. 326 357 IPR006671 -
Cmo01g01859 560 SUPERFAMILY Cyclin-like 282 421 IPR036915 -
Cmo01g01859 560 SMART Cyclin_C_2 424 547 IPR004367 -
Cmo01g01859 560 Gene3D - 307 422 - -
Cmo01g01859 560 PANTHER CYCLIN-A3-1-RELATED 210 558 - -
Cmo01g01859 560 MobiDBLite consensus disorder prediction 197 261 - -
Cmo01g01859 560 MobiDBLite consensus disorder prediction 197 219 - -
Cmo01g01859 560 Pfam Cyclin, C-terminal domain 424 546 IPR004367 -
Cmo01g01859 560 Gene3D - 293 542 - -
Cmo01g01859 560 CDD CYCLIN 325 414 IPR013763 -
Cmo01g01859 560 PANTHER CYCLINS 210 558 IPR039361 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01859 Cmo12g00518 CCT
Cmo01g01859 Cmo05g00159 CCT
Cmo01g01859 Cmo12g00518 ECH
Cmo01g01859 Cmo05g00159 ECH
Cmo01g01859 Cmo09g00266 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01859 Cmo-Chr1:13520996 Cmo05g00159 Cmo-Chr5:686871 6.93E-162 dispersed
Cmo01g01859 Cmo-Chr1:13520996 Cmo11g01399 Cmo-Chr11:9837969 1.88E-92 wgd
Cmo01g01859 Cmo-Chr1:13520996 Cmo12g00518 Cmo-Chr12:3185191 5.72E-168 wgd
Cmo01g01859 Cmo-Chr1:13520996 Cmo09g00266 Cmo-Chr9:1172689 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01859 K06627 - csv:101207493 636.721