Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01862 ATGCATTCAACGATGGAAGAGACACTGTTGTTCTCTAATTTTGAGGTCCCATTGTTGGTCCTCATTTTAGCTCTGCTTCTGATTTTCAAATTCAGAAAAGCGGAGCACAAAAATCTCCCACCCGGCCCACCTTCCCTTCCGGTAATCGGCCACCTTCATCTTTTAAAAGAGCCATTCCACCAAATGCTGCAAGATCTGTCGCAAAAGTACGGTCCAATCCTGTCGCTGTCACTCGGTTTCCGCCCCGTGGTGGTTGTTTCCTCCCCGGCCGCCGCCCAGGAGTGCTTTTCGAAAAACGACATCATATTTGCCAGCCGTCCTCGTATGATTTCCGGGAAGATTCTGAATTATGACTACACTGCCGTTGGTGCTACTGCATACGGACAGCACTGGCGCATCATGCGCCGCATAGCTACCACTGAGCTACTCTCCACGTACCGTCTCAACGCATTAATTAACATCCGACAGCAGGAGGTTAAATTATGGCTCAAAAGTTTATACCGAATTTCGGGCAAAAATAATGTCCGAGTGGAGATAAGGTCCAAATTGACGGAGCTGTCTTTCAATATTGCGTTGATGTTGATGGTTGGGAAGCGTTACTTTGGAGATGAAGCAGTGGATGATAGTGAGGAGGCGAGGGAGTTGAAGAACACAATGAAGCAAGTTCCTCTACTGAGCGGAGCATCGTATCCAGCTGATTTCTTGTCGGTTTTGAAATTGGTCGATTATCAAGGATTCAGGAAGAGGCTGGCTAAGGTGAGGGTGGACGGCGATGCTTTTGCACAAAGTTTGATTGATGAACGTCGGAACAAGAAAGCCGATGACAATGAACGAAAGACCATGATTGATAGTCTGCTGTCCATGCAACAAATGGAACCTGAATATTACAAGGACGATATCATCAAGGGCCAATTCTTGACACTTCTGGCTGCGGGAACTGACACAACAGCGGGAACACTAGAGTGGGCGTTGTCGCTACTCCTCAACCATCCGACCGCGATGAAGAAGGCGTGGACTGAGATAAACGAGCATGTTGGGGACGAACGGCTGGTAGAGGAGATGGATCTTAACCAGCTACACTATCTTCAAGGCATAATCAACGAGACGTATCGCCTATTTCCAGCGCTTCCAATATTGGTTCCACGAGAATCATCTGAAGACTGCACAATTGGAGGGTTTGACGTTCCGAAAGGAACCATGTTAGTGGTGAATGCATGGGCCATCCATCGAGACCCAAAAGTGTGGGAAGATCCCAATAGCTTCCGACCAGAGAGGTTCAAAGAGGGCGAGAGTGTGGAAGTAAGTAAATTGTTGCCATTTGGGATGGGGAGAAGGGCGTGTCCAGGGGCTGGCCTTGCGCACAGAGTGGTGGGGCTGGCGCTGGCCACTCTGATTCAGTGCTTTGAGTGGGAGAGACTCGACAACAAGGAAGTAGACTTGACTCCTGGAATTGGACTCACCATGCCCAAAGCCCGCCCTTTGGTAGCTATGTTCAAACCTCGTGCTCCCATCATTCATTTACTATCACAGCTTTGA 1536 48.83 MHSTMEETLLFSNFEVPLLVLILALLLIFKFRKAEHKNLPPGPPSLPVIGHLHLLKEPFHQMLQDLSQKYGPILSLSLGFRPVVVVSSPAAAQECFSKNDIIFASRPRMISGKILNYDYTAVGATAYGQHWRIMRRIATTELLSTYRLNALINIRQQEVKLWLKSLYRISGKNNVRVEIRSKLTELSFNIALMLMVGKRYFGDEAVDDSEEARELKNTMKQVPLLSGASYPADFLSVLKLVDYQGFRKRLAKVRVDGDAFAQSLIDERRNKKADDNERKTMIDSLLSMQQMEPEYYKDDIIKGQFLTLLAAGTDTTAGTLEWALSLLLNHPTAMKKAWTEINEHVGDERLVEEMDLNQLHYLQGIINETYRLFPALPILVPRESSEDCTIGGFDVPKGTMLVVNAWAIHRDPKVWEDPNSFRPERFKEGESVEVSKLLPFGMGRRACPGAGLAHRVVGLALATLIQCFEWERLDNKEVDLTPGIGLTMPKARPLVAMFKPRAPIIHLLSQL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13529829 13532319 + CmoCh01G018620.1 Cmo01g01862 375345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01862 511 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 SUPERFAMILY Cytochrome P450 40 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 Gene3D Cytochrome P450 26 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 Pfam Cytochrome P450 40 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01862 511 PANTHER CYTOCHROME P450 FAMILY PROTEIN 18 504 - -
Cmo01g01862 511 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 18 504 - -
Cmo01g01862 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01862 Cmo-Chr1:13529829 Cmo09g00263 Cmo-Chr9:1165145 2.16E-19 dispersed
Cmo09g00264 Cmo-Chr9:1168565 Cmo01g01862 Cmo-Chr1:13529829 5.08E-114 dispersed
Cmo01g01862 Cmo-Chr1:13529829 Cmo05g00157 Cmo-Chr5:679848 8.77E-23 wgd
Cmo01g01862 Cmo-Chr1:13529829 Cmo09g00261 Cmo-Chr9:1159525 1.44E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01862 - K13260 csv:101207242 776.933