Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01869 ATGGCGAGACGGCATTGTTACCCAATATCCATTCTACATTCATCAAGTTCAGGTCACCAAGACGCTTCATTTCTTCTTGATTCCCCGTTTTGCTTGGAGGAAGAGAATGGGGATGGCCTTATCCAACCAAAGGACCAAACTTTCTTAATAAATGTTTGTGTCAATTCCCCAAATTCTGTCTTCTTGTCGGAGAGGGAAGACGAGGAATTGGTGTCTCTGTTCTCTAAGGAGAACAAAAATGAGTTTCTTCATAACACTCTCTCGCACAATCCCTCTTTAGCAGCCGCTCGCTCCAAGGCTGTGGCCTGGATTCTGAAGGTCAATGCCCATTACTCTTTCACTGCACTCACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGGCCCATCTCACCGCCATTGCTTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCGCGTGCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTACTTTGAAGCTAAAACCATTAAAAAAATGGAGATTCTTGTTCTCTCTACGCTTGTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGATTATATCGTAAGACGGCTCGGGTTCAGGGACAAGCTCTGTTCTGAATTCCTCTGTAGATGTGAACGATTACTTCTCTCTGTCATCTTAGATTCTAGATTTGTATGTTTTCTTCCATCAGTCATAGCAAGCGCCATTATTTTTCAAGTTATCAACAACATAGAACCAAATGCCGCCGCCAAATGCCACGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAGGTAGAAGACTGTTCAAGATTCATCTCAGAAGCATCATCGAAAGAACGACACAGAAAGGACTGTAAGAATAAACGAAGATTCAGTTTAATGGATGGTCGGAATCGGAATGTCGACTGTGCTGTGTCCTCGCCGGAGACAGCAACCAAGAAGAGAAAAATTTGA 1005 44.08 MARRHCYPISILHSSSSGHQDASFLLDSPFCLEEENGDGLIQPKDQTFLINVCVNSPNSVFLSEREDEELVSLFSKENKNEFLHNTLSHNPSLAAARSKAVAWILKVNAHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMAHLTAIACLSLAAKVEETRVPLLLDLQVEENEYYFEAKTIKKMEILVLSTLVWRMNPVNPLSFLDYIVRRLGFRDKLCSEFLCRCERLLLSVILDSRFVCFLPSVIASAIIFQVINNIEPNAAAKCHDQLLGILQIDKDKVEDCSRFISEASSKERHRKDCKNKRRFSLMDGRNRNVDCAVSSPETATKKRKI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13549712 13551186 - CmoCh01G018690.1 Cmo01g01869 375352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01869 334 Gene3D - 84 197 - -
Cmo01g01869 334 Pfam Cyclin, C-terminal domain 199 308 IPR004367 -
Cmo01g01869 334 Gene3D - 198 286 - -
Cmo01g01869 334 PANTHER CYCLIN D3.1 PROTEIN 42 303 - -
Cmo01g01869 334 SUPERFAMILY Cyclin-like 200 308 IPR036915 -
Cmo01g01869 334 SUPERFAMILY Cyclin-like 59 197 IPR036915 -
Cmo01g01869 334 SMART cyclin_7 102 190 IPR013763 -
Cmo01g01869 334 PANTHER CYCLINS 42 303 IPR039361 -
Cmo01g01869 334 SMART Cyclin_C_2 199 311 IPR004367 -
Cmo01g01869 334 CDD CYCLIN 97 189 IPR013763 -
Cmo01g01869 334 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Cmo01g01869 334 Pfam Cyclin, N-terminal domain 77 197 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01869 Cmo05g00163 CCT
Cmo01g01869 Cmo12g00510 CCT
Cmo01g01869 Cmo05g00163 ECH
Cmo01g01869 Cmo12g00510 ECH
Cmo01g01869 Cmo09g00254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01869 Cmo-Chr1:13549712 Cmo05g00163 Cmo-Chr5:696188 4.70E-97 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo11g01386 Cmo-Chr11:9696714 2.56E-72 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo12g00510 Cmo-Chr12:3144150 6.75E-95 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo16g00370 Cmo-Chr16:1697863 3.52E-85 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo19g00602 Cmo-Chr19:6691342 2.30E-70 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo04g00511 Cmo-Chr4:2537126 1.54E-73 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo07g00695 Cmo-Chr7:3141146 2.44E-77 wgd
Cmo01g01869 Cmo-Chr1:13549712 Cmo09g00254 Cmo-Chr9:1141404 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01869 K14505 - csv:101218302 475.707