Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01876 ATGCTGCTTCTCAAGAACAATATGGCTGTGGAGTTTATGGTGGGTTTTGGGGATGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATAGCTTCCTCACCTTGGTGTCTCATACTCCTAATCAACATCACTCTCAACACGATTCTTCCACTTCCACTGCGCCCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACTGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTCTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTTCCCAACAACCCCCATCAGCCTTCTAATCAGCCAAGTACTTTTCAACCCCAGCACAATAACTCATCGGGGGGACTAAAAAATGGGTTTGTAAACAGAAAAGACTCAACATCCGCCATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTACACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGCGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCATCCGAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCTACCCAAACACCTGCACCGCTTCTTCTCGAGTCATCATAA 1140 48.33 MLLLKNNMAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHSFLTLVSHTPNQHHSQHDSSTSTAPDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASSPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNPHQPSNQPSTFQPQHNNSSGGLKNGFVNRKDSTSAINFAASPSISAANSYISSLTGDTESLHPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTQTPAPLLLESS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13576602 13578355 + CmoCh01G018760.1 Cmo01g01876 375359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01876 379 MobiDBLite consensus disorder prediction 105 140 - -
Cmo01g01876 379 MobiDBLite consensus disorder prediction 118 140 - -
Cmo01g01876 379 MobiDBLite consensus disorder prediction 167 192 - -
Cmo01g01876 379 Pfam Plant zinc cluster domain 259 304 IPR018872 -
Cmo01g01876 379 ProSiteProfiles WRKY domain profile. 301 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01876 379 Pfam WRKY DNA -binding domain 308 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01876 379 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 28 379 - -
Cmo01g01876 379 MobiDBLite consensus disorder prediction 162 192 - -
Cmo01g01876 379 SMART WRKY_cls 306 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01876 379 SUPERFAMILY WRKY DNA-binding domain 304 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g01876 379 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 28 379 IPR044810 GO:0003700
Cmo01g01876 379 Gene3D WRKY domain 291 367 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01876 Cmo09g00247 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01876 Cmo-Chr1:13576602 Cmo20g00978 Cmo-Chr20:5451258 4.96E-14 dispersed
Cmo01g01876 Cmo-Chr1:13576602 Cmo03g00982 Cmo-Chr3:7396973 1.42E-107 wgd
Cmo01g01876 Cmo-Chr1:13576602 Cmo07g00703 Cmo-Chr7:3171880 1.25E-09 wgd
Cmo01g01876 Cmo-Chr1:13576602 Cmo09g00247 Cmo-Chr9:1115812 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9152 PF03106 WRKY 3.80E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01876 - - cmo:103493562 588.956