Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01876 | ATGCTGCTTCTCAAGAACAATATGGCTGTGGAGTTTATGGTGGGTTTTGGGGATGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATAGCTTCCTCACCTTGGTGTCTCATACTCCTAATCAACATCACTCTCAACACGATTCTTCCACTTCCACTGCGCCCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACTGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTCTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTTCCCAACAACCCCCATCAGCCTTCTAATCAGCCAAGTACTTTTCAACCCCAGCACAATAACTCATCGGGGGGACTAAAAAATGGGTTTGTAAACAGAAAAGACTCAACATCCGCCATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTACACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGCGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCATCCGAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCTACCCAAACACCTGCACCGCTTCTTCTCGAGTCATCATAA | 1140 | 48.33 | MLLLKNNMAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHSFLTLVSHTPNQHHSQHDSSTSTAPDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASSPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNPHQPSNQPSTFQPQHNNSSGGLKNGFVNRKDSTSAINFAASPSISAANSYISSLTGDTESLHPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTQTPAPLLLESS | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13576602 | 13578355 | + | CmoCh01G018760.1 | Cmo01g01876 | 375359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01876 | 379 | MobiDBLite | consensus disorder prediction | 105 | 140 | - | - | |
Cmo01g01876 | 379 | MobiDBLite | consensus disorder prediction | 118 | 140 | - | - | |
Cmo01g01876 | 379 | MobiDBLite | consensus disorder prediction | 167 | 192 | - | - | |
Cmo01g01876 | 379 | Pfam | Plant zinc cluster domain | 259 | 304 | IPR018872 | - | |
Cmo01g01876 | 379 | ProSiteProfiles | WRKY domain profile. | 301 | 367 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01876 | 379 | Pfam | WRKY DNA -binding domain | 308 | 364 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01876 | 379 | PANTHER | WRKY TRANSCRIPTION FACTOR NTEIG-D48 | 28 | 379 | - | - | |
Cmo01g01876 | 379 | MobiDBLite | consensus disorder prediction | 162 | 192 | - | - | |
Cmo01g01876 | 379 | SMART | WRKY_cls | 306 | 366 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01876 | 379 | SUPERFAMILY | WRKY DNA-binding domain | 304 | 366 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01876 | 379 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 28 | 379 | IPR044810 | GO:0003700 | |
Cmo01g01876 | 379 | Gene3D | WRKY domain | 291 | 367 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01876 | Cmo09g00247 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo20g00978 | Cmo-Chr20:5451258 | 4.96E-14 | dispersed | |
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo03g00982 | Cmo-Chr3:7396973 | 1.42E-107 | wgd | |
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo07g00703 | Cmo-Chr7:3171880 | 1.25E-09 | wgd | |
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo09g00247 | Cmo-Chr9:1115812 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9152 | PF03106 | WRKY | 3.80E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01876 | - | - | cmo:103493562 | 588.956 |