Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01882 | ATGGAAGGACAAGTTTGCTCGGGTGTAAGTTCATCGACAGAGAAGAGGAAGCAAAGGCATCAACAACAGAAGCAATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTAGCGGAAATCAGAGAACCCAACAAGCGTTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCTGCCGCCAGGGCTTACGACACCGCCGTTTTCTACCTCCGAGGCCCCTCCGCCCGGCTGAATTTCCCGGAATCGATTTTCGAAGAGGACCAACTGCAGGATGTGTCAGCCGCCTCCATACGAAAAAGAGCCACCGAAATCGGCGCTAGGGTTGACGCCATCCAAACCTCTCTACTTGCCTCTAATTCAAACTCTCAAATTTCGGAGAAGCCTGATTTAAACCAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA | 435 | 51.49 | MEGQVCSGVSSSTEKRKQRHQQQKQYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPESIFEEDQLQDVSAASIRKRATEIGARVDAIQTSLLASNSNSQISEKPDLNQYPNPESSDDD | 144 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13603157 | 13604812 | + | CmoCh01G018820.1 | Cmo01g01882 | 375365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01882 | 144 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 142 | - | - | |
Cmo01g01882 | 144 | MobiDBLite | consensus disorder prediction | 119 | 144 | - | - | |
Cmo01g01882 | 144 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmo01g01882 | 144 | MobiDBLite | consensus disorder prediction | 119 | 137 | - | - | |
Cmo01g01882 | 144 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | PRINTS | Ethylene responsive element binding protein signature | 64 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | Gene3D | AP2/ERF domain | 24 | 84 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | SUPERFAMILY | DNA-binding domain | 25 | 84 | IPR016177 | GO:0003677 | |
Cmo01g01882 | 144 | SMART | rav1_2 | 25 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01882 | 144 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 142 | - | - | |
Cmo01g01882 | 144 | CDD | AP2 | 28 | 84 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01882 | Cmo-Chr1:13603157 | Cmo09g00380 | Cmo-Chr9:1663002 | 6.97E-26 | dispersed | |
Cmo01g01882 | Cmo-Chr1:13603157 | Cmo12g00506 | Cmo-Chr12:3117285 | 2.53E-07 | wgd | |
Cmo01g01882 | Cmo-Chr1:13603157 | Cmo05g00168 | Cmo-Chr5:722820 | 1.28E-64 | wgd | |
Cmo01g01882 | Cmo-Chr1:13603157 | Cmo09g00240 | Cmo-Chr9:1083972 | 7.31E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9153 | PF00847 | AP2 | 1.80E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01882 | K09286 | - | csv:101219005 | 235.728 |