Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01882 ATGGAAGGACAAGTTTGCTCGGGTGTAAGTTCATCGACAGAGAAGAGGAAGCAAAGGCATCAACAACAGAAGCAATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTAGCGGAAATCAGAGAACCCAACAAGCGTTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCTGCCGCCAGGGCTTACGACACCGCCGTTTTCTACCTCCGAGGCCCCTCCGCCCGGCTGAATTTCCCGGAATCGATTTTCGAAGAGGACCAACTGCAGGATGTGTCAGCCGCCTCCATACGAAAAAGAGCCACCGAAATCGGCGCTAGGGTTGACGCCATCCAAACCTCTCTACTTGCCTCTAATTCAAACTCTCAAATTTCGGAGAAGCCTGATTTAAACCAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA 435 51.49 MEGQVCSGVSSSTEKRKQRHQQQKQYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPESIFEEDQLQDVSAASIRKRATEIGARVDAIQTSLLASNSNSQISEKPDLNQYPNPESSDDD 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13603157 13604812 + CmoCh01G018820.1 Cmo01g01882 375365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01882 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 142 - -
Cmo01g01882 144 MobiDBLite consensus disorder prediction 119 144 - -
Cmo01g01882 144 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g01882 144 MobiDBLite consensus disorder prediction 119 137 - -
Cmo01g01882 144 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Cmo01g01882 144 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Cmo01g01882 144 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Cmo01g01882 144 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Cmo01g01882 144 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Cmo01g01882 144 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Cmo01g01882 144 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Cmo01g01882 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 142 - -
Cmo01g01882 144 CDD AP2 28 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01882 Cmo-Chr1:13603157 Cmo09g00380 Cmo-Chr9:1663002 6.97E-26 dispersed
Cmo01g01882 Cmo-Chr1:13603157 Cmo12g00506 Cmo-Chr12:3117285 2.53E-07 wgd
Cmo01g01882 Cmo-Chr1:13603157 Cmo05g00168 Cmo-Chr5:722820 1.28E-64 wgd
Cmo01g01882 Cmo-Chr1:13603157 Cmo09g00240 Cmo-Chr9:1083972 7.31E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9153 PF00847 AP2 1.80E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01882 K09286 - csv:101219005 235.728