Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01898 ATGATTTTCGCCAAGACGGACTTTGTAGACTACTTCTCTAACCCGGGAAAGGCTATAGATGATCAGAGATTGTTGGTGAATTGCGTAGTAATTAGCAAATCAGCAGCTATGGCTTTGACCGGAGTCATTTGCCGCGACGAGAAGATTTGTTTGTGTTTTCTATTCGCGTTTTGCCCTGATTCTTTTTGCAATTATCGAGGCGTGGGACCACCAGTGACTGCAATGCTGCCGTTTCTGTCTACATCGAAGGTCGGCAAGTCCTTGATTTCGCGTGGACGTGGTATCAGACATGCCATCAAATACGCAAGTTGTAATGCCGAGCCGTGGGAATATCAAAACGTTCGACATGTGAAGTGTATTGCCGGTGTTGAGACCTCGTCGATTCATAGACTGTTTGATAAGGGTCAAAAGATTTTTCCCGGGAGCTTCCATGATATTAGTGCTGTACAAAGGAGGCGATTCATTGGCTGTGGAGATGGGGAGGAGGGCGGCGTTCTATCCAAACAGGATCATAAGATTTCTTCTGGGAACCTTCGTGATATTAGTGCTGGACAAACGAGGCGATTTATTGGCTGTGGAGATGGGCAAGAGGGCGGCGTCCTATCCAAAATTTACGAGGAGAGACGCGTAATGGGGTATTCTCCGGAGCAGTTATTTGACGTAGTTGCAGCTGTTGACTTGTACCAAGATTTTGTTCCGTGGTGCCAGCGGTCAGAGGTAATCAAAACCTATCCTGATGGATCATTTGATGCTGAATTGGAGATTGGCTTCAAATTTCTTGTTGAGAGTTACACTTCACATGTAGAGATTCAAAGACCGAAGTCTGTAAAGACAACAGTATCTCAGAGCACGCTGTTTGATCACTTGATAAATATTTGGGAGTTCCAACCGGGACCAGTTCCAGGGACTTGCAACCTCTACTTTTTAGTAGATTTTAAGTTCCAGTCACCCCTGTATCGACAGGTGGCTTCGGTGTTCTTTAAGGAGGTTGTCTCAAAACTGGTTGGTTCATTCAACGATCGCTGCCGATTGATTTATGGACCAGGGGTTGCAGTCCTTGAAAATTCATACGGCCAAAGAGCTTAA 1086 45.58 MIFAKTDFVDYFSNPGKAIDDQRLLVNCVVISKSAAMALTGVICRDEKICLCFLFAFCPDSFCNYRGVGPPVTAMLPFLSTSKVGKSLISRGRGIRHAIKYASCNAEPWEYQNVRHVKCIAGVETSSIHRLFDKGQKIFPGSFHDISAVQRRRFIGCGDGEEGGVLSKQDHKISSGNLRDISAGQTRRFIGCGDGQEGGVLSKIYEERRVMGYSPEQLFDVVAAVDLYQDFVPWCQRSEVIKTYPDGSFDAELEIGFKFLVESYTSHVEIQRPKSVKTTVSQSTLFDHLINIWEFQPGPVPGTCNLYFLVDFKFQSPLYRQVASVFFKEVVSKLVGSFNDRCRLIYGPGVAVLENSYGQRA 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13660369 13666094 + CmoCh01G018980.1 Cmo01g01898 375381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01898 361 SUPERFAMILY Bet v1-like 205 347 - -
Cmo01g01898 361 PANTHER SPERM PROTEIN HOMOLOG 167 360 IPR044996 GO:0006744|GO:0045333|GO:0048039
Cmo01g01898 361 PANTHER COENZYME Q-BINDING PROTEIN COQ10, MITOCHONDRIAL 167 360 - -
Cmo01g01898 361 PANTHER COENZYME Q-BINDING PROTEIN COQ10, MITOCHONDRIAL 75 168 - -
Cmo01g01898 361 Gene3D - 203 347 IPR023393 -
Cmo01g01898 361 Pfam Polyketide cyclase / dehydrase and lipid transport 211 338 IPR005031 -
Cmo01g01898 361 PANTHER SPERM PROTEIN HOMOLOG 75 168 IPR044996 GO:0006744|GO:0045333|GO:0048039
Cmo01g01898 361 CDD COQ10p_like 205 343 IPR044996 GO:0006744|GO:0045333|GO:0048039
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01898 K18588 COQ10; coenzyme Q-binding protein COQ10 - csv:101214157 417.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01898 Cmo09g00220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01898 Cmo-Chr1:13660369 Cmo09g00220 Cmo-Chr9:1026414 1.37E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g764 Blo01g01530 Blo12g00957 Bda01g00566 . Bpe02g00427 . . Bma01g02276 . . Cma01g01839 Cma09g00228 Car01g01433 . . Cpe06g00159 . . . . . . . . . . . . . . . Cone4ag1575 . Cone17ag0844 Cone20ag0191 . Csa04g02407 . . . . . . . . . . . Cmo01g01898 Cmo09g00220 . . . Car09g00196 . . Bhi09g03327 . . . Hepe01g1761 Mch11g0287 . . . . . . . . . . Chy07g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008704 0 1 2 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 0 1 4 0 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01898 Cmo_Chr01 FPKM 20.117954 20.920179 16.572184 15.618701 25.925024 28.208883 26.388044 28.575251 28.289696 26.849606