Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01899 ATGGGTGTAATTTTTGCATCTCTTTTGCTATTTTTTCTCATTGTATTGTCGTATATTTATTTAAACAGAAACAAGAGGGCAGGCATTAGAGATGGAGCTAAGCTCCCTCCTGGTTCTTTAGGGTGGCCTTATATTGGAGAAACCCTTCAGCTCTATTCTCAAGACCCTGATTTGTTCTTCGCCGCCAAACAGAAAAGGTATGGGGAGATTTTTAAGACGCATATACTTGGATGTCCTTGCGTGATGTTAGCTAGCCCCGAGGCGGCGAGGTTCGTGCTGGTGACACAGGCTCATTTGTTTAAGCCTACTTACCCCAAAAGCAAAGAGCGTTTGATCGGCCCATCTGCCTTGTTTTATCACCAAGGTGACTATCATTGCCGCCTTAGGAAGCTGGTTCAGAGCTCTCTATCTTTGGACGTCATCCGGAGCCTGGTCCCCGATATCGACTCCGTAACCACCTCCGCTCTCCACTCCTGGACCGGTGCCCACCTTATGAACACTTTTCATGAGATGAAAAAGATATCCTTTGAAGTTGGGATATTGGCCATTTTTGGGCATTTAGAAGCTGCTTACAAAGAGGACCTGAAAAAAAACTACAGCATTTTGGACGCAGGCTACAATTCTTTCCCCACCAACATTCCTGGAACTCCATACAAAAAGGCACTCTCGGCTAGAAAGCGGCTAAGTAAAATCTTAGGTGATATAATCCACGAAAGGAGGGAGAAGAAGGTGGGGAAGAAGGATCTTTTGGGGTGCTTTCTGAACTCCATAGATGAAGAAGGTGAAGCTATAAGCGATGCCCAAATGGAAGATAACATAATTGGGGTGCTTTTTGCGGCTCAAGACACCACAGCCAGTGTCATGACTTGGGTCGTCAAGTACCTTTATGACCAACCCAAGCTTCTTCAAACGCTAAAAAAAGAGCAACAGGAAATTTTAGAGTTCAATTACGAGAAAAATCAACCGTTGAACTGGGTTCAGACAAGAAACATGCCCATGAGTTATAAGGTAGTATTGGAGAGCTTAAGGATGGCGAGCATTATATCATTCACATTCAGGGAGGCTGTAGCTGACGTGGAATACAAAGGGTATTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTTCGAAACATCCATCACAGTCCCGAATATTTTGCCGATCCTCACAAATTCGACCCTTCTAGATTTGAGGGAAAATATGGGCGTTTCAAATTTCAGGTTGCACCGAAACCCAATACGTTCATGCCATTTGGCAGTGGAGTTCATACCTGCCCAGGGAACGAGCTTGCCAAGCTGGAGATCTTGATCCTGATTCATCATCTAGTCACCAAATTCAGGTGGGAATTAGTTGGTTCGCAAAACGGGGTTCAGCATAGTCCATTTCCCGTTCCCTCTCAAGGCCTTCCAGCACGATTTTGGAACATAGCCCACCACAACACCGTACATACCAAAATGGACCCCAACTAA 1470 44.97 MGVIFASLLLFFLIVLSYIYLNRNKRAGIRDGAKLPPGSLGWPYIGETLQLYSQDPDLFFAAKQKRYGEIFKTHILGCPCVMLASPEAARFVLVTQAHLFKPTYPKSKERLIGPSALFYHQGDYHCRLRKLVQSSLSLDVIRSLVPDIDSVTTSALHSWTGAHLMNTFHEMKKISFEVGILAIFGHLEAAYKEDLKKNYSILDAGYNSFPTNIPGTPYKKALSARKRLSKILGDIIHERREKKVGKKDLLGCFLNSIDEEGEAISDAQMEDNIIGVLFAAQDTTASVMTWVVKYLYDQPKLLQTLKKEQQEILEFNYEKNQPLNWVQTRNMPMSYKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFADPHKFDPSRFEGKYGRFKFQVAPKPNTFMPFGSGVHTCPGNELAKLEILILIHHLVTKFRWELVGSQNGVQHSPFPVPSQGLPARFWNIAHHNTVHTKMDPN 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13671091 13673473 + CmoCh01G018990.1 Cmo01g01899 375382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01899 489 PANTHER CYTOCHROME P450 26 8 474 - -
Cmo01g01899 489 SUPERFAMILY Cytochrome P450 33 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 8 474 - -
Cmo01g01899 489 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 Gene3D Cytochrome P450 27 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 Pfam Cytochrome P450 36 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506|GO:0016705
Cmo01g01899 489 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 425 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01899 489 PRINTS E-class P450 group I signature 415 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01899 Cmo05g00185 CCT
Cmo01g01899 Cmo05g00185 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01899 Cmo-Chr1:13671091 Cmo16g00553 Cmo-Chr16:2690840 0 dispersed
Cmo06g01707 Cmo-Chr6:11754447 Cmo01g01899 Cmo-Chr1:13671091 1.39E-26 dispersed
Cmo14g01432 Cmo-Chr14:11670325 Cmo01g01899 Cmo-Chr1:13671091 1.05E-29 dispersed
Cmo17g00705 Cmo-Chr17:7126644 Cmo01g01899 Cmo-Chr1:13671091 2.20E-76 dispersed
Cmo01g01899 Cmo-Chr1:13671091 Cmo11g01361 Cmo-Chr11:9491145 0 wgd
Cmo01g01899 Cmo-Chr1:13671091 Cmo19g00623 Cmo-Chr19:6822808 0 wgd
Cmo01g01899 Cmo-Chr1:13671091 Cmo05g00185 Cmo-Chr5:818448 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01899 K09843 - csv:101213916 812.372