Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01917 ATGAGGCTTCGGAATGTTAATGGGGAAAAGTTATCTGGTGATACTGGGGATTCATCAAGTGAAGATGGAGTAGAGGAGAAAGATGACGGAAATTTGGTGTTGAGCGATGATGATTATGATGAGAGCGGGGATGGTATAGAGACTTGGCAACCGAGCTTGAAAAGATGTCTTAAATATTTGGCTGATAGTAAGTTCATATTCAGCACTGTGGAGAAAATCATTGATGAACCTAAGCAACGTTGCTTACTGAAAGCCAGTATTTTGATTGCAGATAGTTACTTCAGAAAATCAGGGTTGGAACATTCAGAATATCTTGCAAAGGATCTAAAATGGTTCAGTGAACAGGGTATTGTGATACCCGAACCGAGCAGTCCAGGAGTTCCTTATGCTGAGTATCTGGAGGAACTTGCTGAGAGGAGTGCCCTTTTGTTACTTTTCCATTACTATAATATATACTTTTCACATATAGCAGGTGGCAACAGACTCGTTGAAGGTAGAAAGCTTGAATTTTATACATGGGCAGGGGACGTAGAAGAACTGCTGAAAGTGCTCGTGAGAAGCTTAACATGCTTGGAGAGCACTGATCTCGAGATGAGAAAAATAAATGCTCGAGAGAAGCAACCTAGGGTAGGGCTTGACAATGCTCAGAAAATGGTTCTCTTTCAATCGATCAAAGTTGCGATGAATCTACAGGGCTGCGCTCATTCAGAGAAAGATGAAAACTATTGCAAAGAAAATGACATTGGAGAGAGCAACTCAGAATGTTGTGCTATATTAGATCCCAAGACAGAAAAACAAAGGGAAGAAGAAGGAAAAGCTCCTTATAGGCCAAAGGAGACGAATCCATCATTCTTAGTAGAACGAAGGGAAGGGATGGGAAGGGGGAGAAGTAAATGGAAGCACGTGAAGAGTTGCTAA 918 41.5 MRLRNVNGEKLSGDTGDSSSEDGVEEKDDGNLVLSDDDYDESGDGIETWQPSLKRCLKYLADSKFIFSTVEKIIDEPKQRCLLKASILIADSYFRKSGLEHSEYLAKDLKWFSEQGIVIPEPSSPGVPYAEYLEELAERSALLLLFHYYNIYFSHIAGGNRLVEGRKLEFYTWAGDVEELLKVLVRSLTCLESTDLEMRKINAREKQPRVGLDNAQKMVLFQSIKVAMNLQGCAHSEKDENYCKENDIGESNSECCAILDPKTEKQREEEGKAPYRPKETNPSFLVERREGMGRGRSKWKHVKSC 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13729960 13737341 + CmoCh01G019170.1 Cmo01g01917 375400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01917 305 MobiDBLite consensus disorder prediction 261 305 - -
Cmo01g01917 305 CDD HemeO 57 201 IPR002051 GO:0004392|GO:0006788
Cmo01g01917 305 MobiDBLite consensus disorder prediction 261 294 - -
Cmo01g01917 305 Gene3D - 46 244 IPR016084 -
Cmo01g01917 305 PANTHER HEME OXYGENASE 1, CHLOROPLASTIC-RELATED 1 192 IPR016951 -
Cmo01g01917 305 MobiDBLite consensus disorder prediction 1 39 - -
Cmo01g01917 305 PANTHER INACTIVE HEME OXYGENASE 2, CHLOROPLASTIC-RELATED 1 192 - -
Cmo01g01917 305 SUPERFAMILY Heme oxygenase-like 49 201 IPR016084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01917 - - - bhj:120086178 236.113
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01917 Cmo-Chr1:13729960 Cmo11g00547 Cmo-Chr11:2661458 6.19E-37 dispersed
Cmo01g01917 Cmo-Chr1:13729960 Cmo09g00207 Cmo-Chr9:959974 3.43E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g810 . . . . . . . . . . Cma01g01856 . Car01g01447 . . . . . . . . . . . . . . . . . . Cone4ag1560 Cone7ag1391 . . Lsi04g01581 Csa04g02388 . . . . Bda08g01328 . . . . Bma05g00095 . Cmo01g01917 . . . . . . . Bhi09g03350 . . . Hepe01g1742 Mch11g0268 . Cla05g02021 Cam05g2171 Cec05g2187 Cco05g2235 Clacu05g2164 Cmu05g2032 Cre05g2160 . . Chy07g00114 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001127 3 3 3 4 2 2 3 3 3 2 3 3 3 2 2 2 3 5 3 2 2 2 1 1 2 2 2 5 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01917 Cmo_Chr01 FPKM 158.674942 181.3452 25.498537 29.484434 0.960065 1.45968 2.216017 536.820129 551.610657 570.869934