Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01932 ATGAAAGGCTCGGGCTGCTGTTTGTTCATTTCTCTTCTTCTTCTCCAATCTTTTTCGTTTTTCGCTTCGGCTCTTTCCGATGCCGAAGCGTCGTCCATTGCCCGCCGCCAGCTTCTAACCTTTCTCGAGACCGATGATTTGCCCGACGATTACGAGTCCACGGTTGTGGTGACTGAAACCTTTCCCAATTCCAGGCTCCGACGGGCTTTCATTGCCCTTCAAGCCTGGAAGAGGTCAATTTACTCCGACCCTTTAAACACCACCGCCAATTGGGTCGGCGCTGATGTCTGTTCCTACACCGGAGTTTTCTGTACCTCTGCTCTGGACGACCCCAATGTCCAAGTCGTGGCCGGAATTGACCTCAACCATGCCGACATTGCCGGTTACCTCCCCGTTGAGCTCGGTCTACTGTCGGACATCGCATTGTTTCACATCAACTCCAACCGATTCTGCGGCCTTATCCCGCCGAGCTTCGAGAGGATGATTCTCCTTCACGAGCTCGACGTTAGCAACAACAGATTTGTGGGCCCTTTTCCTGAAGTCGTTTTGAGGATTCCGAATTTGAAATTTCTGGACATTAGATTCAACGATTTCGAAGGGAAATTGCCTCCTGCCCTTTTCACCAAGGAGCTCGACGCCATTTTCCTCAATAACAACAGGTTCACCTCCCACATTCCTGAGAATTTCGGCGACTCGCCTGCGTCGGTGATCGTGATTGCCAATAACAACTTCACGGGGTGCATTCCGACAAGCATTGGGAAAATGGGGAACACGTTGAACGAGGTTTTAATGTTGAACAATGCGCTTGGTGGTTGCATCCCTGGTGAGCTTGCTCTGCTTGGAAATGCGACGGTTTTCGATGTTTCTTCGAATCAATTGAGTGGGAGCTTGCCGATGAGCTTAGGTGGGTTGAAGAAAGTGGAGATTATTGATGTCTCTTCCAATAGTTTGACTGGTGTGGTGCATGGAGGCGTGTGTAATTTGCCTAAATTGGCTGTGTTCACATTCGCTGATAATTTGTTTGATGGCGAAGACAATAGCAAAAACCGGCGGAGACTTGTAGTTCAGAGATCAGCAAGGCCGTGGATTGCAGTCGGGTTAAGTGCGGCGGAGGATCCACACCTCCTAAACAGCCAGAGGCACCAATTGATGATCCTCATCGTCAATCACATGTCCCAATGA 1182 49.83 MKGSGCCLFISLLLLQSFSFFASALSDAEASSIARRQLLTFLETDDLPDDYESTVVVTETFPNSRLRRAFIALQAWKRSIYSDPLNTTANWVGADVCSYTGVFCTSALDDPNVQVVAGIDLNHADIAGYLPVELGLLSDIALFHINSNRFCGLIPPSFERMILLHELDVSNNRFVGPFPEVVLRIPNLKFLDIRFNDFEGKLPPALFTKELDAIFLNNNRFTSHIPENFGDSPASVIVIANNNFTGCIPTSIGKMGNTLNEVLMLNNALGGCIPGELALLGNATVFDVSSNQLSGSLPMSLGGLKKVEIIDVSSNSLTGVVHGGVCNLPKLAVFTFADNLFDGEDNSKNRRRLVVQRSARPWIAVGLSAAEDPHLLNSQRHQLMILIVNHMSQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13801421 13802672 - CmoCh01G019320.1 Cmo01g01932 375415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01932 393 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Cmo01g01932 393 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 3 351 - -
Cmo01g01932 393 SUPERFAMILY L domain-like 71 343 - -
Cmo01g01932 393 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 351 - -
Cmo01g01932 393 Gene3D Ribonuclease Inhibitor 70 359 IPR032675 -
Cmo01g01932 393 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01932 Cmo-Chr1:13801421 Cmo17g00425 Cmo-Chr17:2835184 2.64E-131 dispersed
Cmo01g01932 Cmo-Chr1:13801421 Cmo11g00596 Cmo-Chr11:2873279 7.93E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01932 - - cmax:111480794 633.254