Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01934 ATGATGGAGACGGAGTCTTGCCAGTTGATGGTGACTTCCAGGCGGCCTTGCTTTTATGCTTTCTATTCCTCCACTCTTTGTTCAGAACGACTGAAACTTCCTTTGAAATTTGTCAGATACTTGGGAGAAATAATAGGCCGATCAGTCACATTAATTGGTCCTAGCGGCCATACCTGGCTTGTTGACTTGATCCAGCAGAATGATAACTTGTTCTTCTGTGACGGATGGCCAACCTTTGCACGAGATCATTCCCTAGAATGTGGTGATTTCTTGGTATTTAGATATGATGGCGAGTTGAATTTCACTCTGCAAGTTTTTGATCAGAGTGCATGTGAGAAAGAAGATGCATTTCATTCTCAGTGCAGTCAAGATAACACAGGCCATAAAAGAGATAGGGAAGAGGACCCTACATGCCCAGATACATGTGCAGAGGCTGTGGCAAAGAAAATGAGGAGCATTTTTTATGTTCATTCAGAGTGCAGGGAGGGCCTAGCAGCCATAAAAACTGTTGAGGTCCATAAAAATGGAGCTGGTCAGAATGGGATCAGTAAAGTTGATGACGTAACTATGCAAGATAAAATTCTGGCCTTATCACTATTATCTCAGGATGAGAAAAAAATTTCCCAGTCATTTAGCTCCAATTATCCATATTTTGTGAGAATCATGAAAAGCTTCAATGTTCGTGGTTCATACACATTGAATATCCCTTATCAATTTTCTATGGCACATCTTCCTAGCTGCAAATTAAAGTTGGTCCTTCACAACTTGAAAGGGGAATCCTGGCCAGTGAATTCTGTTCCTACAATAAGAGTGCATACAAGTCATACCCTTTGTGGAGGATGGATGGCCTTTGTGCGTGGGAATGACATCAACATGGGAGATATATGTGTTTTTGAGCTTGTCCTGGATTGTGAATTGCGTGTTCGCATCTTCAGGGTTGGAAAGGAAATATCTGAGGATCAAAGTAGAAAAGGATCTTTGAGTCAGCTAGATGCTGACCATGCAAAAATATCTCGTAAAACTCTCAAAGGTTTGCCAAAGAAAATGAATGGAAACTCTCACAAGGTTCATTCAAAATGCCCCAAAAGAATTGAAGTACTTGATAAAAAAAGTTCGAAGTCTTGGCAAGAACCTTTCTGCAATGATGTTAGGAAACATTCTAGTGCAAAAAAGGTCTCCACCAAAGTCGTGGTTTGTTCTCAATCAAAAAAGCCTTCTAAGCGTTTGGTCAATCAGAGAACCAGTGTCAAAGGCGATCTTGTATTACCAGCTAGACTTGGTTTGCGAGCAATGTTAGCCCTTGATGAAGAAAGAGCAGCTAAGTCATTTGCTTCTTGTTTTCCAACTTTTGTCAGAATCATGAAAAAGTTCAACACTAGTGGTTCATATACTTTAAAAATTCCACATCAGTTTTCTTCGGTACATTTCCCTAACAGCAAAACTGAGATTATACTTCGCGGTCCAAACGGGGGATGTTGGATTGTGAACTCAGTACCAGACTCAATGGGGCGAATGATGCATACTTTTTGCGGCGGTTGGATGTCGTTTGTTCGTGACAATGGTATCCAGATGGGGGATATCTGCATTTTTGAACTTGTTGGCAAGTGTGAATTGCTTGTACATGTAACCGGAGTTGGGAAGAAAGGGTTTGACCTCAGCAGTGAAGTCGCAACTTGTAGTGAATTAGCAATTGTACCAACAACAAGCAATCATCCTTCTCTGTCACCGGTCATCTTTTTCCCTCAAAATTCTCATTGTAGCCGGTCCCAGGTTAGGCTGTCGTTGAACCCATGGCAACGGATGACTGTCAAAATCTCAAAAGAAAAAGAACTAAACGTTACAACATCTGAAACTCCCTTTTACCTGTCATCATACATTACAAAGCTTACAACCTTACAACATCTGAAACTTAACCCCACAATTTGGTTTTGCAAATGA 1938 40.92 MMETESCQLMVTSRRPCFYAFYSSTLCSERLKLPLKFVRYLGEIIGRSVTLIGPSGHTWLVDLIQQNDNLFFCDGWPTFARDHSLECGDFLVFRYDGELNFTLQVFDQSACEKEDAFHSQCSQDNTGHKRDREEDPTCPDTCAEAVAKKMRSIFYVHSECREGLAAIKTVEVHKNGAGQNGISKVDDVTMQDKILALSLLSQDEKKISQSFSSNYPYFVRIMKSFNVRGSYTLNIPYQFSMAHLPSCKLKLVLHNLKGESWPVNSVPTIRVHTSHTLCGGWMAFVRGNDINMGDICVFELVLDCELRVRIFRVGKEISEDQSRKGSLSQLDADHAKISRKTLKGLPKKMNGNSHKVHSKCPKRIEVLDKKSSKSWQEPFCNDVRKHSSAKKVSTKVVVCSQSKKPSKRLVNQRTSVKGDLVLPARLGLRAMLALDEERAAKSFASCFPTFVRIMKKFNTSGSYTLKIPHQFSSVHFPNSKTEIILRGPNGGCWIVNSVPDSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCELLVHVTGVGKKGFDLSSEVATCSELAIVPTTSNHPSLSPVIFFPQNSHCSRSQVRLSLNPWQRMTVKISKEKELNVTTSETPFYLSSYITKLTTLQHLKLNPTIWFCK 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13809791 13813922 + CmoCh01G019340.1 Cmo01g01934 375417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01934 645 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 325 IPR044837 -
Cmo01g01934 645 ProSiteProfiles B3 DNA-binding domain profile. 218 314 IPR003340 GO:0003677
Cmo01g01934 645 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 10 325 - -
Cmo01g01934 645 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 344 560 - -
Cmo01g01934 645 CDD B3_DNA 448 542 IPR003340 GO:0003677
Cmo01g01934 645 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Cmo01g01934 645 Pfam B3 DNA binding domain 218 312 IPR003340 GO:0003677
Cmo01g01934 645 Pfam B3 DNA binding domain 450 541 IPR003340 GO:0003677
Cmo01g01934 645 SUPERFAMILY DNA-binding pseudobarrel domain 211 313 IPR015300 -
Cmo01g01934 645 CDD B3_DNA 216 312 IPR003340 GO:0003677
Cmo01g01934 645 Gene3D - 9 111 IPR015300 -
Cmo01g01934 645 SMART B3_2 450 548 IPR003340 GO:0003677
Cmo01g01934 645 SMART B3_2 18 109 IPR003340 GO:0003677
Cmo01g01934 645 SMART B3_2 218 314 IPR003340 GO:0003677
Cmo01g01934 645 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 344 560 IPR044837 -
Cmo01g01934 645 SUPERFAMILY DNA-binding pseudobarrel domain 445 544 IPR015300 -
Cmo01g01934 645 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Cmo01g01934 645 CDD B3_DNA 23 107 IPR003340 GO:0003677
Cmo01g01934 645 Gene3D - 201 315 IPR015300 -
Cmo01g01934 645 Gene3D - 434 547 IPR015300 -
Cmo01g01934 645 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
Cmo01g01934 645 ProSiteProfiles B3 DNA-binding domain profile. 450 546 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01934 - - - csv:101214902 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01934 Cmo09g00192 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01934 Cmo-Chr1:13809791 Cmo07g00748 Cmo-Chr7:3388548 7.09E-09 dispersed
Cmo01g01934 Cmo-Chr1:13809791 Cmo12g00450 Cmo-Chr12:2758114 2.55E-19 wgd
Cmo01g01934 Cmo-Chr1:13809791 Cmo05g00218 Cmo-Chr5:931755 3.59E-19 wgd
Cmo01g01934 Cmo-Chr1:13809791 Cmo09g00192 Cmo-Chr9:863015 1.74E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9156 PF02362 B3 3.90E-12 CL0405 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01934 Cmo_Chr01 FPKM 25.794998 27.342409 14.862036 14.260132 22.208765 22.933077 23.177979 0.365263 0.316097 0.356806