Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01938 ATGAACCCGCCGGACCTCTCCTTGCACATCAGCCTCCCCTTCTTCGCCCCGCCCTCTCACAATCCTGACTTCACCCATCAAAATGGTTGCTTCCACTTTGGATATGAACCAGCCCATCTGGGTCGTCCTCGTCACCAAGCTTATAATGTCCTCCATGGCCGCCGCCGTGACTTTAAACCAAGTGTTGGTGGGTGTGGAGTGAGAAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACGACGCTACATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAAGTGGAGTTAATGATGCGGGTACATGTGGGTTGAAAGAGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATCGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTATCTCTTCAAAAATCTAACTTTCACACACTCAAACGATTACCGCCCCAACCCCGCGGTGCTTGGCCGCTCATCGGCCACCTCCCTTTACTAAGCGGAAAAGAACCAAACCACACCACCTTGGGAAAATTGGCCGACGTTTATGGACCAATCTTCATGTTAAGATCAGGCGCAAACAGAATCTTGATTGTGAGCGGCTGGGAAGTCGCAAGGGAATGCTTTACTGTCAACGACAAAGCATTTGCCTCCCGCCCCAAGTTTGCAGCCGCGCAGCTACTTGGCTATGATTATGCCATGTTTGCGCTGAGCCAATACGGACCATACTGGAGCCATTTGCGTAAAATAGCCACGCTTGAACTCCTAGCCAACCATCGACTCGAGAAGCTTAAACACATCCTAAGATCAGAGGTTCAAATCTCCATCCAGAAATTACATCAGTTCTGCAAATCAAATAATGGAGGCAACAAAGCGTCGATGGAGATGGAGACGTGGTTTGGGGAAATAGCGCTGAATACTATATTCAGAATGGTGGTCGGAAAACGATTCACCACCGCTTTTGAAGGTAGCGGCGGAGCAGAGTATCGGCACGCGTTGGAGGATTTTTTTAGTTTGTTTACATCGTTTGTTCCGTCGGATTTGTTTCCGTTTCTGAAATGGTTCGACTTCGGAGGTCATAAGAAGGCCATGAAGAAGACGGCGAAGGTGTTGGACGAGATGCTTGATAAATGGCTCACAGAGCATCGAGAGAGGAGAAATTCCGGCGAAGTGGCGCCGGAAGAGCAGGATTTCATGCACGTTATGTTGTCTTTTATAGACAATGAAGAATTTCCCGGCTACGATTCCGACACGGTCATCAAATCTACCTGTTTGACTATGATATTGGGGGGATTTCACACCACCACAACTGAAATGACTTGGGCTCTTTCCTTACTCCTCAATCATGAAGAAGCATACGAGAAGGTTCAAAAGGAATTGGACGAACATGTTGGGAGAGACAGGGTAGCGAGAGAATCGGATCTAAAAAATTTGATATATCTCCAAGCCGTTGTGAAAGAAACATTGCGTATGTACCCTGCAGCACAGCTGTCGGTCCCTCATGAATCTACGGAAGATTGTATAGCTGCTGGGTATCACATCCCAGCAAAGACACGACTGTGGGTGAATCTTTATAGACTCCAAAGAGATCCAAGTGTTTGGGAGAATCCTAATGAATTTTGTCCAGAGAGGTTTTTGACAACTCAAAAGGATTTTGATGTTAAAGGACGAAATCACCAGTTGATACCGTTTGGTGCTGGTCGAAGAATTTGCCCTGCAGTAAATTTTGCCCTCCAAATTTTGCACCAGTCGTTTGCAAGGCTTCTTCATGAGTTTGAAATTGGACGACCATCCGAAGAGCCACTCAATATGGAAGAAAATGCTGCATTGAACCTCACTAAGAAAATCCCTCTTCAAGTTGTCTTAACTCCGCGTGTTTCTACTAAGGTTCATGAATGA 1950 46.36 MNPPDLSLHISLPFFAPPSHNPDFTHQNGCFHFGYEPAHLGRPRHQAYNVLHGRRRDFKPSVGGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHESGVNDAGTCGLKEMFRTVKNSVKKGTDDYGRPEIEADGVLSSSSSSSSSSSSSSSLSLQKSNFHTLKRLPPQPRGAWPLIGHLPLLSGKEPNHTTLGKLADVYGPIFMLRSGANRILIVSGWEVARECFTVNDKAFASRPKFAAAQLLGYDYAMFALSQYGPYWSHLRKIATLELLANHRLEKLKHILRSEVQISIQKLHQFCKSNNGGNKASMEMETWFGEIALNTIFRMVVGKRFTTAFEGSGGAEYRHALEDFFSLFTSFVPSDLFPFLKWFDFGGHKKAMKKTAKVLDEMLDKWLTEHRERRNSGEVAPEEQDFMHVMLSFIDNEEFPGYDSDTVIKSTCLTMILGGFHTTTTEMTWALSLLLNHEEAYEKVQKELDEHVGRDRVARESDLKNLIYLQAVVKETLRMYPAAQLSVPHESTEDCIAAGYHIPAKTRLWVNLYRLQRDPSVWENPNEFCPERFLTTQKDFDVKGRNHQLIPFGAGRRICPAVNFALQILHQSFARLLHEFEIGRPSEEPLNMEENAALNLTKKIPLQVVLTPRVSTKVHE 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13822365 13827105 + CmoCh01G019380.1 Cmo01g01938 375421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01938 649 PRINTS E-class P450 group I signature 320 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 499 517 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 540 564 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 221 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 588 611 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 197 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 456 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 578 588 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS E-class P450 group I signature 436 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 Coils Coil 463 483 - -
Cmo01g01938 649 Gene3D Cytochrome P450 158 648 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 Gene3D - 73 123 - -
Cmo01g01938 649 PANTHER CYTOCHROME P450 82C3-RELATED 164 647 - -
Cmo01g01938 649 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 581 590 IPR017972 GO:0005506|GO:0016705
Cmo01g01938 649 Pfam Cytochrome P450 167 633 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 MobiDBLite consensus disorder prediction 120 152 - -
Cmo01g01938 649 PRINTS P450 superfamily signature 579 588 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS P450 superfamily signature 447 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 PRINTS P450 superfamily signature 500 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01938 649 MobiDBLite consensus disorder prediction 135 152 - -
Cmo01g01938 649 PANTHER CYTOCHROME P450 164 647 - -
Cmo01g01938 649 SUPERFAMILY Cytochrome P450 167 642 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01938 - - - csv:101208091 715.687
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01938 Cmo09g00188 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01938 Cmo-Chr1:13822365 Cmo01g01941 Cmo-Chr1:13838099 0 dispersed
Cmo09g00190 Cmo-Chr9:854431 Cmo01g01938 Cmo-Chr1:13822365 3.24E-34 dispersed
Cmo01g01938 Cmo-Chr1:13822365 Cmo01g01939 Cmo-Chr1:13828458 0 tandem
Cmo01g01938 Cmo-Chr1:13822365 Cmo09g00178 Cmo-Chr9:792951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01938 Cmo_Chr01 FPKM 0.0 0.0 2.008793 3.08128 0.0 0.0 0.0 0.280051 0.223456 0.251515